Evidence map›Paper›PMID 12239331›Full record

ArticleJournal of virology2002

Evolutionary dynamics of viral attenuation.

Marty R Badgett, Alexandra Auer, Leland E Carmichael, Colin R Parrish, James J Bull

Open access · greenAbstract read
In one paragraph

Article in Journal of virology, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
5.1field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 73 citations in OpenAlex.

  1. Article
  2. Review
  3. Will COVID-19 become mild, like a cold?Epidemiology and infection · 2024
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  5. Reduced social function in experimentally evolvedProceedings. Biological sciences · 2023
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  8. Article
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  10. Review
  11. Influence of temperature on the antigenic changes of virus-like particles.Clinical and experimental vaccine research · 2020
    Article
  12. An overview of COVID-19.Journal of Zhejiang University. Science. B · 2020
    Review
  13. Review
  14. Evolutionary dynamics of viral escape under antibodies stress: A biophysical model.Protein science : a publication of the Protein Society · 2016
    Article
  15. Plague Vaccines: Status and Future.Advances in experimental medicine and biology · 2016
    Review
  16. Article
  17. Developing live vaccines against plague.Journal of infection in developing countries · 2011
    Review
  18. Canine parvovirus: current perspective.Indian journal of virology : an official organ of Indian Virological Society · 2010
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Marty R BadgettSection of Integrative Biology, Institute for Cellular and Molecular Biology, University of Texas, Austin, TX 78712-1023, USA.
Alexandra Auer
Leland E Carmichael
Colin R Parrish
James J Bull
Cornell University · USThe University of Texas at Austin · US

Funding

PARVOVIRUS STRUCTURE, FUNCTION AND HOST RANGER01AI028385 · NIAID · CORNELL UNIVERSITY ITHACA · PI PARRISH, COLIN R. · 1990 to 2011
$3.0M
Experimental viral evolution at high mutation rateR01GM057756 · NIGMS · UNIVERSITY OF TEXAS AUSTIN · PI BULL, JAMES J · 1998 to 2013
$2.9M
NIAID NIH HHS AI 28385NIAID NIH HHS R01 AI028385NIGMS NIH HHS GM 57756NIGMS NIH HHS R01 GM057756
6 · The paper itself

Abstract

The genetic trajectory leading to viral attenuation was studied in a canine parvovirus (CPV) strain grown on dog kidney cells for 115 transfers. Consensus sequences of viral populations at passages 0, 3, 30, 50, 80, and 115 were obtained from PCR products covering 86% of the genome; clones from each of the 80th and 115th passages were also sequenced, covering 69% of the genome. Sixteen changes were fixed in the 115th-passage virus sample. Levels of polymorphism were strikingly different over time, in part because of a plaque-cloning step at passage 112 that reduced variation: passage 80 had 19 variants common among the clones, but passage 115 had only a single common variant. Several mutations increased in the culture at the same time, with most reaching fixation only after the 80th passage. The pattern of evolution was consistent with recombination and not with separate selective sweeps of individual mutations. Thirteen of the changes observed were identical to or at the same positions as changes observed in other isolates of CPV or feline panleukopenia virus.

Indexed as

Adaptation, PhysiologicalAnimalsCapsidCatsCell LineConsensus SequenceDirected Molecular EvolutionDNA, ViralDogsParvovirus, CanineViral Nonstructural ProteinsDNA, ViralViral Nonstructural Proteins

Identifiers

PMID12239331
PMCPMC136581
OpenAlexW2120513132

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.