Evidence map›Paper›PMID 12466525›Full record

ArticleNucleic acids research2002

The 3' untranslated region of human vimentin mRNA interacts with protein complexes containing eEF-1gamma and HAX-1.

May Al-Maghrebi, Hervé Brulé, Marina Padkina, Carrie Allen, W Michael Holmes, Zendra E Zehner

Open access · bronzeAbstract read
In one paragraph

Article in Nucleic acids research, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
1.0field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 84 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Article
  6. The evolution of vimentin and desmin inFrontiers in physiology · 2022
    Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Review
  13. Article
  14. eEF1Bγ binds the Che-1 and TP53 gene promoters and their transcripts.Journal of experimental & clinical cancer research : CR · 2016
    Article
  15. Article
  16. Article
  17. HAX-1: a novel p-body protein.DNA and cell biology · 2015
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

May Al-MaghrebiDepartment of Biochemistry and Molecular Biophysics and the Massey Cancer Center, Medical College of Virginia Campus of Virginia Commonwealth University, Richmond, VA 23298-0614, USA.
Hervé Brulé
Marina Padkina
Carrie Allen
W Michael Holmes
Zendra E Zehner
Virginia Commonwealth University Medical Center · US

Funding

VIMENTINSS REGULATORY FACTORS INVOLVED IN DEVELOPMENTR01HL045422 · NHLBI · VIRGINIA COMMONWEALTH UNIVERSITY · PI ZEHNER, ZENDRA ELIZABETH · 1990 to 2003
$947k
NHLBI NIH HHS HL-45422NHLBI NIH HHS R01 HL045422
6 · The paper itself

Abstract

Previously, we have shown that the vimentin 3' untranslated region (3'UTR) contains a highly conserved region, which is sufficient for the perinuclear localization of a reporter mRNA. This region was shown to specifically bind protein(s) by band shift analyses. UV-cross-linking studies suggest these proteins are 46- and 35-kDa in mass. Here, we have used this sequence as 'bait' to isolate RNA binding proteins using the yeast three-hybrid method. This technique relies on a functional assay detecting bona fide RNA-protein interaction in vivo. Three cDNA isolates, HAX-1, eEF-1gamma and hRIP, code for proteins of a size consistent with in vitro cross- linking studies. In all cases, recombinant proteins were capable of binding RNA in vitro. Although hRIP is thought to be a general mRNA binding protein, this represents an unreported activity for eEF-1gamma and HAX-1. Moreover, HAX-1 binding appears to be specific to vimentin's 3'UTR. Both in vivo synthesized eEF-1gamma and HAX-1 proteins were 'pulled out' of HeLa whole cell extracts by binding to a RNA affinity column comprised of vimentin's 3'UTR. Moreover, size-fractionation of extracts results in the separation of large complexes containing either eEF-1gamma or HAX-1. Thus, in addition to their known functions, both eEF-1gamma and HAX-1 are RNA binding proteins, which suggests new roles in mRNA translation and/or perinuclear localization.

Indexed as

3' Untranslated RegionsAdaptor Proteins, Signal TransducingBinding SitesCell ExtractsHeLa CellsHumansMacromolecular SubstancesMutationNuclear Pore Complex ProteinsPeptide Elongation Factor 1Protein Interaction MappingProteinsRNA-Binding ProteinsVimentin3' Untranslated RegionsAdaptor Proteins, Signal TransducingAGFG1 protein, humanCell ExtractsHAX1 protein, humanMacromolecular SubstancesNuclear Pore Complex ProteinsPeptide Elongation Factor 1ProteinsRNA-Binding ProteinsVimentin

Identifiers

PMID12466525
PMCPMC137969
OpenAlexW2032171250

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.