Evidence map›Paper›PMID 15070723›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2004

Mitochondrial DNA ligase in Crithidia fasciculata.

Krishna Murari Sinha, Jane C Hines, Nicholas Downey, Dan S Ray

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 31 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Mitochondrial origin-binding protein UMSBP mediates DNA replication and segregation in trypanosomes.Proceedings of the National Academy of Sciences of the United States of America · 2007
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Review
  16. Closing the gaps in kinetoplast DNA network replication.Proceedings of the National Academy of Sciences of the United States of America · 2004
    Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Krishna Murari SinhaMolecular Biology Institute and Department of Microbiology, Immunology, and Molecular Genetics, University of California, Los Angeles, CA 90095, USA.
Jane C Hines
Nicholas Downey
Dan S Ray
University of California, Los Angeles · US

Funding

REGULATION OF TRYPANOSOME DNA REPLICATIONR01GM053254 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI RAY, DAN S · 1995 to 2013
$4.3M
Regulation of Trypanosome DNA ReplicationR56GM053254 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI RAY, DAN S · 2008 to 2009
$453k
NIGMS NIH HHS GM53254NIGMS NIH HHS R01 GM053254NIGMS NIH HHS R56 GM053254
6 · The paper itself

Abstract

Kinetoplast DNA (kDNA), the form of mitochondrial DNA in trypanosomatids, consists of thousands of interlocked circular DNAs organized into a compact disk structure. A type II DNA topoisomerase, a DNA polymerase beta, and a structure-specific endonuclease have been localized to antipodal sites flanking the kDNA disk along with nascent DNA minicircles. We have cloned a gene (LIG k) encoding a mitochondrial DNA ligase in the trypanosomatid Crithidia fasciculata, and we show that an epitope-tagged form of the ligase colocalizes with the other replication proteins at the antipodal sites and also at the two faces of the kDNA disk. DNA LIG k becomes adenylated in reactions with ATP, and the adenylate moiety is removed by incubation with pyrophosphate or nicked DNA. The ligase interacts physically with the beta polymerase and is proposed to be involved in the repair of gaps in the newly synthesized minicircles. In yeast and mammals, a single gene encodes both nuclear and mitochondrial forms of DNA ligase. The LIG K protein sequence has low similarity to mitochondrial DNA ligases in other eukaryotes and is distinct from the C. fasciculata nuclear DNA ligase (LIG I).

Indexed as

Amino Acid SequenceAnimalsBase SequenceCrithidia fasciculataDNA LigasesDNA, MitochondrialDNA PrimersDNA, ProtozoanDNA Topoisomerases, Type IIMolecular Sequence DataTrypanosomaDNA LigasesDNA, MitochondrialDNA PrimersDNA, ProtozoanDNA Topoisomerases, Type II

Identifiers

PMID15070723
PMCPMC384752
OpenAlexW2012689443

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.