Evidence map›Paper›PMID 15498926›Full record

ArticleNucleic acids research2004

Expression profiles frame the promoter specificity dilemma of the ETS family of transcription factors.

Peter C Hollenhorst, David A Jones, Barbara J Graves

Abstract read
In one paragraph

Article in Nucleic acids research, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 130 papers.

0numbers the graph read from it
0cells of the map it votes in
130citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

130 citing papers in PubMed.

  1. Trial
  2. Review
  3. Article
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  9. Review
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  16. Review
  17. Review
  18. Endothelial Cell Differentiation and Hemogenic Specification.Cold Spring Harbor perspectives in medicine · 2022
    Review
  19. Review
  20. Observational

70 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Peter C HollenhorstDepartment of Oncological Sciences, Huntsman Cancer Institute, 2000 Circle of Hope, University of Utah, Salt Lake City, UT 84112, USA.
David A Jones
Barbara J Graves

Funding

UTAH REGIONAL CANCER CENTERP30CA042014 · NCI · UTAH STATE HIGHER EDUCATION SYSTEM--UNIVERSITY OF UTAH · PI Max Loveless · 1986 to 2026
$72.6M
MULTIDISCIPLINARY CANCER RESEARCH TRAINING PROGRAMT32CA093247 · NCI · UNIVERSITY OF UTAH · PI AYER, DONALD E · 2002 to 2011
$5.2M
APC and Retinoids in Zebrafish Enterocyte DevelopmentR01CA116468 · NCI · UNIVERSITY OF UTAH · PI JONES, DAVID A · 2005 to 2020
$4.2M
Transcriptional Control Mechanisms by ETS FactorsR01GM038663 · NIGMS · UNIVERSITY OF UTAH · PI GRAVES, BARBARA J · 1992 to 2015
$3.9M
RETROVIRAL TRANSCRIPTIONAL CONTROL MECHANISMSR29GM038663 · NIGMS · UNIVERSITY OF UTAH · PI GRAVES, BARBARA J · 1987 to 1991
–
NCI NIH HHS CA24014NCI NIH HHS P30 CA042014NCI NIH HHS T32 CA093247NCI NIH HHS T32 CA93247NIGMS NIH HHS GM38663NIGMS NIH HHS R01 GM038663
6 · The paper itself

Abstract

Sequence-specific DNA binding proteins that function as transcription factors are frequently encoded by gene families. Such proteins display highly conserved DNA binding properties, yet are expected to retain promoter selectivity. In this report we investigate this problem using the ets gene family, a group of metazoan genes whose members regulate cell growth and differentiation and are mutated in human cancers. We tested whether the level of mRNA can serve as a specificity determinant. The mRNA levels of the 27 paralogous human ets genes were measured in 23 tissues and cell lines. Real-time RT-PCR provided accurate measurement of absolute mRNA levels for each gene down to one copy per cell. Surprisingly, at least 16 paralogs were expressed in each cell sample and over half were expressed ubiquitously. Tissues and complementary cell lines showed similar expression patterns, indicating that tissue complexity was not a limitation. There was no unique, highly expressed gene for each cell type. Instead, one of only eight ets genes showed the highest expression in all samples. DNA binding studies illustrate both overlapping and unique specificities for ubiquitous ETS proteins. These findings establish the parameters of the promoter specificity dilemma within the ets family of transcription factors.

Indexed as

Promoter Regions, GeneticBinding SitesCell LineDNADNA-Binding ProteinsGene Expression ProfilingHumansProto-Oncogene ProteinsProto-Oncogene Proteins c-etsReverse Transcriptase Polymerase Chain ReactionRNA, MessengerTranscription FactorsDNADNA-Binding ProteinsProto-Oncogene ProteinsProto-Oncogene Proteins c-etsRNA, MessengerTranscription Factors

Identifiers

PMID15498926
PMCPMC524310

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.