Evidence map›Paper›PMID 17007612›Full record

ArticleThe Biochemical journal2006

The Dbs PH domain contributes independently to membrane targeting and regulation of guanine nucleotide-exchange activity.

Mark A Baumeister, Kent L Rossman, John Sondek, Mark A Lemmon

Open access · bronzeAbstract read
In one paragraph

Article in The Biochemical journal, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 50 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Role of RhoG as a regulator of cellular functions: integrating insights on immune cell activation, migration, and functions.Inflammation research : official journal of the European Histamine Research Society ... [et al.] · 2023
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Mark A BaumeisterDepartment of Biochemistry and Biophysics, University of Pennsylvania School of Medicine, Philadelphia, PA 19104, USA.
Kent L Rossman
John Sondek
Mark A Lemmon
University of North Carolina at Chapel Hill · USUniversity of Pennsylvania · US

Funding

Tiam1, a prototypical Rho-family GEFR01GM062299 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI SONDEK, JOHN E · 2001 to 2011
$2.3M
SPECIFICITY OF DOMAIN INTERACTIONS IN CELL SIGNALINGR01GM056846 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI LEMMON, MARK A · 1998 to 2010
$2.3M
Predoctoral Fellowship for Minority StudentsF31GM065066 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI BAUMEISTER, MARK A. · 2001 to 2004
$128k
NIGMS NIH HHS F31 GM065066NIGMS NIH HHS F31-GM65066NIGMS NIH HHS R01 GM056846NIGMS NIH HHS R01 GM062299NIGMS NIH HHS R01-GM56846NIGMS NIH HHS R01-GM62299
6 · The paper itself

Abstract

Dbl family GEFs (guanine nucleotide-exchange factors) for the Rho GTPases almost invariably contain a PH (pleckstrin homology) domain adjacent to their DH (Dbl homology) domain. The DH domain is responsible for GEF activity, and the PH domain plays a regulatory role that remains poorly understood. We demonstrated previously that Dbl family PH domains bind phosphoinositides with low affinity and cannot function as independent membrane targeting modules. In the present study, we show that dimerization of a Dbs (Dbl's big sister) DH/PH domain fragment is sufficient to drive it to the plasma membrane through a mechanism involving PH domain-phosphoinositide interactions. Thus, the Dbs PH domain could play a significant role in membrane targeting if it co-operates with other domains in the protein. We also show that mutations that prevent phosphoinositide binding by the Dbs PH domain significantly impair cellular GEF activity even in chimaeric proteins that are robustly membrane targeted by farnesylation or by the PH domain of phospholipase C-delta1. This finding argues that the Dbs PH domain plays a regulatory role that is independent of its ability to aid membrane targeting. Thus, we suggest that the PH domain plays dual roles, contributing independently to membrane localization of Dbs (as part of a multi-domain interaction) and allosteric regulation of the DH domain.

Indexed as

Amino Acid SequenceAnimalsGuanine Nucleotide Exchange FactorsGuanine NucleotidesHeLa CellsHumansMiceMolecular Sequence DataProtein Structure, TertiaryProtein Transportrho GTP-Binding ProteinsGuanine Nucleotide Exchange FactorsGuanine Nucleotidesrho GTP-Binding Proteins

Identifiers

PMID17007612
PMCPMC1698603
OpenAlexW1994953412

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.