Evidence map›Paper›PMID 17989180›Full record

ArticleJournal of virology2008

A cis element between the TATA Box and the transcription start site of the major immediate-early promoter of human cytomegalovirus determines efficiency of viral replication.

Hiroki Isomura, Mark F Stinski, Ayumi Kudoh, Sanae Nakayama, Takayuki Murata, Yoshitaka Sato, Satoko Iwahori, Tatsuya Tsurumi

Open access · greenAbstract read
In one paragraph

Article in Journal of virology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
1.2field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 38 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Hiroki IsomuraDivision of Virology, Aichi Cancer Center Research Institute, 1-1, Kanokoden, Chikusa-ku, Nagoya 464-8681, Japan. hisomura@aichi-cc.jp
Mark F Stinski
Ayumi Kudoh
Sanae Nakayama
Takayuki Murata
Yoshitaka Sato
Satoko Iwahori
Tatsuya Tsurumi
Aichi Cancer Center · JPUniversity of Iowa · US

Funding

THE GENES THAT REGULATE HUMAN CYTOMEGALOVIRUS EXPRESSIONR01AI013562 · NIAID · UNIVERSITY OF IOWA · PI STINSKI, MARK F · 1985 to 2005
$1.4M
REGULATION OF HUMAN CYTOMEGALOVIRUS GENE EXPRESSIONR21AI013562 · NIAID · UNIVERSITY OF IOWA · PI STINSKI, MARK F · 2000 to 2000
$294k
NIAID NIH HHS AI-13562NIAID NIH HHS R01 AI013562NIAID NIH HHS R21 AI013562
6 · The paper itself

Abstract

The promoter of the major immediate-early (MIE) genes of human cytomegalovirus (HCMV), also referred to as the CMV promoter, possesses a cis-acting element positioned downstream of the TATA box between positions -14 and -1 relative to the transcription start site (+1). We determined the role of the cis-acting element in viral replication by comparing recombinant viruses with the cis-acting element replaced with other sequences. Recombinant virus with the simian CMV counterpart replicated efficiently in human foreskin fibroblasts, as well as wild-type virus. In contrast, replacement with the murine CMV counterpart caused inefficient MIE gene transcription, RNA splicing, MIE and early viral gene expression, and viral DNA replication. To determine which nucleotides in the cis-acting element are required for efficient MIE gene transcription and splicing, we constructed mutations within the cis-acting element in the context of a recombinant virus. While mutations in the cis-acting element have only a minor effect on in vitro transcription, the effects on viral replication are major. The nucleotides at -10 and -9 in the cis-acting element relative to the transcription start site (+1) affect efficient MIE gene transcription and splicing at early times after infection. The cis-acting element also acts as a cis-repression sequence when the viral IE86 protein accumulates in the infected cell. We demonstrate that the cis-acting element has an essential role in viral replication.

Indexed as

Promoter Regions, GeneticCell LineCytomegalovirusDNA ReplicationHumansImmediate-Early ProteinsMutagenesis, Site-DirectedPoint MutationRecombination, GeneticRNA SplicingTATA BoxTranscription, GeneticTranscription Initiation SiteVirus ReplicationImmediate-Early Proteins

Identifiers

PMID17989180
PMCPMC2224595
OpenAlexW2165550496

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.