Evidence map›Paper›PMID 18195037›Full record

ArticleMolecular and cellular biology2008

Translation of cIAP2 mRNA is mediated exclusively by a stress-modulated ribosome shunt.

Kyle W Sherrill, Richard E Lloyd

Open access · greenAbstract readComparative Study
In one paragraph

Article in Molecular and cellular biology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
1.8field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 39 citations in OpenAlex.

  1. Regulation of translation by upstream translation initiation codons of surfactant protein A1 splice variants.American journal of physiology. Lung cellular and molecular physiology · 2015
    Trial
  2. Article
  3. Review
  4. MultipleFrontiers in plant science · 2022
    Article
  5. Article
  6. Review
  7. Noncanonical Translation Initiation in Eukaryotes.Cold Spring Harbor perspectives in biology · 2019
    Review
  8. Review
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. The current status of vertebrate cellular mRNA IRESs.Cold Spring Harbor perspectives in biology · 2013
    Review
  15. Article
  16. Article
  17. Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Kyle W SherrillDepartment of Molecular Virology and Microbiology, Rm. 860E, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA.
Richard E Lloyd
Baylor College of Medicine · US

Funding

Translation Regulation by Enterovirus ProteinaseR01AI050237 · NIAID · BAYLOR COLLEGE OF MEDICINE · PI LLOYD, RICHARD E · 2002 to 2022
$6.9M
RESEARCH TRAINING PROGRAM IN MOLECULAR VIROLOGYT32AI007471 · NIAID · BAYLOR COLLEGE OF MEDICINE · PI RAMIG, ROBERT FRANKLIN · 1996 to 2010
$2.6M
MECHANISMS OF TRANSLATION CONTROL DURING APOPTOSISR01GM059803 · NIGMS · BAYLOR COLLEGE OF MEDICINE · PI LLOYD, RICHARD E · 1999 to 2007
$2.2M
Translation Regulation by Enterovirus ProteinaseR56AI050237 · NIAID · BAYLOR COLLEGE OF MEDICINE · PI LLOYD, RICHARD E · 2007 to 2007
$384k
NIAID NIH HHS AI-07471NIAID NIH HHS AI-50237NIAID NIH HHS R01 AI050237NIAID NIH HHS R56 AI050237NIAID NIH HHS T32 AI007471NIGMS NIH HHS GM-59803NIGMS NIH HHS R01 GM059803
6 · The paper itself

Abstract

During cellular stress, translation persists or increases for a number of stress-responsive proteins, including cellular inhibitor of apoptosis 2 (cIAP2). The cIAP2 transcript includes a very long (2.78-kb) 5' untranslated region (UTR) with an unusually high number of upstream AUGs (uAUGs), i.e., 64, and a stable predicted secondary structure (DeltaG congruent with -620 kcal/mol) that should completely block conventional scanning-dependent translation initiation. This region did not facilitate internal ribosome entry in vitro or when RNA reporter transcripts were transfected into cells. However, several structural features within the cIAP2 5' UTR were observed to be nearly identical to those required for ribosome shunting in cauliflower mosaic virus RNA and are well conserved in cIAP2 orthologs. Selective mutation revealed that the cIAP2 mRNA mediates translation exclusively via ribosome shunting that bypasses 62 uAUGs. In addition, shunting efficiency was altered by stress and was greatly facilitated by a conserved RNA folding domain (1,470 to 1,877 nucleotides upstream) in a region not scanned by shunting ribosomes. This arrangement suggests that regulation of cIAP2 shunting may involve recruitment of RNA binding proteins to modulate the efficiency of translation initiation.

Indexed as

Peptide Chain Elongation, Translational5' Untranslated RegionsAnimalsBaculoviral IAP Repeat-Containing 3 ProteinBase SequenceCells, CulturedDNA, RecombinantEndoplasmic ReticulumGenes, ReporterHumansInhibitor of Apoptosis ProteinsMolecular Sequence DataNucleic Acid ConformationRibosomesRNA CapsRNA, Messenger5' Untranslated RegionsBaculoviral IAP Repeat-Containing 3 ProteinBIRC3 protein, humanDNA, RecombinantInhibitor of Apoptosis ProteinsRNA CapsRNA, MessengerThapsigarginUbiquitin-Protein Ligases

Identifiers

PMID18195037
PMCPMC2268400
OpenAlexW2100489831

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.