Evidence map›Paper›PMID 18469187›Full record

ArticleInvestigative ophthalmology & visual science2008

Identification of candidate Klf4 target genes reveals the molecular basis of the diverse regulatory roles of Klf4 in the mouse cornea.

Shivalingappa K Swamynathan, Janine Davis, Joram Piatigorsky

Open access · greenAbstract read
In one paragraph

Article in Investigative ophthalmology & visual science, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 54 papers.

0numbers the graph read from it
0cells of the map it votes in
54citing papers in PubMed
1.8field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

54 citing papers in PubMed, 69 citations in OpenAlex.

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  6. Molecular function of Krüppel-like factor 7 in biology.Acta biochimica et biophysica Sinica · 2023
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  8. Eph signaling is regulated by miRNA-210: Implications for corneal epithelial repair.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2022
    Article
  9. The Impact of Iron Chelators on the Biology of Cancer Stem Cells.International journal of molecular sciences · 2021
    Review
  10. Observational
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 3 institutions in 1 country.

Shivalingappa K SwamynathanDepartment of Ophthalmology, University of Pittsburgh School of Medicine, Pittsburgh, Pennsylvania 15213, USA. swamynathansk@upmc.edu
Janine Davis
Joram Piatigorsky
National Eye Institute · USNational Institutes of Health · USUniversity of Pittsburgh · US

Funding

Virus Production and Manipulation of Protein/Gene Expression ModuleP30EY008098 · NEI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI Yuanyuan Chen · 1989 to 2026
$17.8M
MOLECULAR BIOLOGY OF THE CORNEAZ01EY000259 · NEI · NATIONAL EYE INSTITUTE · PI PIATIGORSKY, JORAM · 1990 to 2008
$4.3M
Role of KLF4 and KLF5 in mouse cornea developmentK22EY016875 · NEI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI SWAMYNATHAN, SHIVALINGAPPA KOTTUR · 2009 to 2010
$438k
NEI NIH HHS 1 K22 EY016875-01NEI NIH HHS 5P30 EY08098-19NEI NIH HHS K22 EY016875NEI NIH HHS P30 EY008098
6 · The paper itself

Abstract

purposeKrüppel-like factor 4 (Klf4) plays a crucial role in the development and maintenance of the mouse cornea. In the current study, wild-type (WT) and Klf4-conditional null (Klf4CN) corneal gene expression patterns were examined, to gain understanding of the molecular basis of the Klf4CN corneal phenotype.

methodsExpression of more than 22,000 genes in 10 WT and Klf4CN corneas was compared by microarrays, analyzed using BRB ArrayTools (National Cancer Institute, Bethesda, MD) and validated by Q-RT-PCR. Transient cotransfections were used to test whether Klf4 activates the aquaporin-3, Aldh3a1, and TKT promoters.

resultsScatterplot analysis identified 740 and 529 genes up- and downregulated by more than twofold, respectively, in the Klf4CN corneas. Cell cycle activators were upregulated, whereas the inhibitors were downregulated, consistent with the increased Klf4CN corneal epithelial cell proliferation. Desmosomal components were downregulated, consistent with the Klf4CN corneal epithelial fragility. Downregulation of aquaporin-3, detected by microarray, was confirmed by immunoblot and immunohistochemistry. Aquaporin-3 promoter activity was stimulated 7- to 10-fold by cotransfection with pCI-Klf4. The corneal crystallins Aldh3A1 and TKT were downregulated in the Klf4CN cornea, and their respective promoter activities were upregulated 16- and 9-fold by pCI-Klf4 in cotransfections. The expression of epidermal keratinocyte differentiation markers was affected in the Klf4CN cornea. Although the cornea-specific keratin-12 was downregulated, most other keratins were upregulated, suggesting hyperkeratosis.

conclusionsFunctionally diverse candidate Klf4 target genes were identified, revealing the molecular basis of the diverse aspects of the Klf4CN corneal phenotype. These results establish Klf4 as an important node in the genetic network of transcription factors regulating the corneal homeostasis.

Indexed as

Aldehyde DehydrogenaseAnimalsAquaporin 3Cell Culture TechniquesCell CycleCorneaEpithelium, CornealFemaleGene Expression ProfilingGene Expression RegulationImmunoblottingImmunohistochemistryKruppel-Like Factor 4Kruppel-Like Transcription FactorsMaleMiceAldehyde DehydrogenaseAldh3a1 protein, mouseAqp3 protein, mouseAquaporin 3Klf4 protein, mouseKruppel-Like Factor 4Kruppel-Like Transcription FactorsTransketolase

Identifiers

PMID18469187
PMCPMC2774783
OpenAlexW2079769279

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.