Evidence map›Paper›PMID 18507370›Full record

ArticleJournal of medicinal chemistry2008

Homology modeling and site-directed mutagenesis to identify selective inhibitors of endothelin-converting enzyme-2.

Khatuna Gagnidze, Sachchidanand, Raphael Rozenfeld, Mihaly Mezei, Ming-Ming Zhou, Lakshmi A Devi

Open access · greenAbstract read
In one paragraph

Article in Journal of medicinal chemistry, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.7field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 21 citations in OpenAlex.

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  8. Template-based protein modeling: recent methodological advances.Current topics in medicinal chemistry · 2010
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Khatuna GagnidzeDepartment of Pharmacology and Systems Therapeutics, Mount Sinai School of Medicine, One Gustave L. Levy Place, New York, NY 10029, USA.
Sachchidanand
Raphael Rozenfeld
Mihaly Mezei
Ming-Ming Zhou
Lakshmi A Devi
Icahn School of Medicine at Mount Sinai · US

Funding

Enzymes Involved in Neuropeptide Biosynthesis, Processing and RegulationR01NS026880 · NINDS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI DEVI, LAKSHMI A · 1994 to 2019
$6.5M
STRUCTURE OF PROTEIN MODULES IN CHROMATIN REMODELINGR01CA087658 · NCI · MOUNT SINAI SCHOOL OF MEDICINE OF NYU · PI ZHOU, MING-MING · 2000 to 2016
$4.8M
POST-TRANSLATIONAL REGULATION OF OPIOID RECEPTORSK05DA019521 · NIDA · MOUNT SINAI SCHOOL OF MEDICINE OF NYU · PI DEVI, LAKSHMI A · 2005 to 2014
$1.2M
ENZYMES INVOLVED IN DYNORPHIN BIOSYNTHESISR29NS026880 · NINDS · NEW YORK UNIVERSITY · PI DEVI, LAKSHMI A · 1989 to 1993
–
NCI NIH HHS CA87658NCI NIH HHS R01 CA087658NIDA NIH HHS DA019521NIDA NIH HHS K05 DA019521NINDS NIH HHS NS26880NINDS NIH HHS R01 NS026880
6 · The paper itself

Abstract

Endothelin-converting enzyme-2 (ECE-2), a member of M13 family of zinc metallopeptidases, has previously been shown to process a number of neuropeptides including those derived from prodynorphin, proenkephalin, proSAAS, and amyloid precursor protein. ECE-2, unlike ECE-1, exhibits restricted neuroendocrine distribution and acidic pH optimum; it is consistent with a role in the regulation of neuropeptide levels in vivo. Here, we report the generation of a three-dimensional (3D) molecular model of ECE-2 using the crystal structure of neprilysin (EC 3.4.24.11) as a template. On the basis of the predictions made from the molecular model, we mutated and tested two residues, Trp 148 and Tyr 563, in the catalytic site. The mutation of Tyr 563 was found to significantly affect the catalytic activity and inhibitor binding. The molecular model was used to virtually screen a small molecule library of 13 000 compounds. Among the top-scoring compounds three were found to inhibit ECE-2 with high affinity and exhibited specificity for ECE-2 compared to neprilysin. Thus, the model provides a new useful tool to probe the active site of ECE-2 and design additional selective inhibitors of this enzyme.

Indexed as

Models, MolecularAmino Acid SequenceAspartic Acid EndopeptidasesCatalytic DomainConserved SequenceEndothelin-Converting EnzymesGlycopeptidesKineticsMetalloendopeptidasesMolecular Sequence DataMutagenesis, Site-DirectedNeprilysinProtein ConformationQuinolinesQuinoxalinesRecombinant ProteinsAspartic Acid EndopeptidasesEndothelin-Converting EnzymesGlycopeptidesMetalloendopeptidasesNeprilysinphosphoramidonQuinolinesQuinoxalinesRecombinant ProteinsSmall Molecule LibrariesTryptophanTyrosine

Identifiers

PMID18507370
PMCPMC2706147
OpenAlexW1992820326

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.