Evidence map›Paper›PMID 19582155›Full record

ArticlePloS one2009

Evolutionary insights from a genetically divergent hantavirus harbored by the European common mole (Talpa europaea).

Hae Ji Kang, Shannon N Bennett, Laarni Sumibcay, Satoru Arai, Andrew G Hope, Gabor Mocz, Jin-Won Song, Joseph A Cook, Richard Yanagihara

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 65 papers.

0numbers the graph read from it
0cells of the map it votes in
65citing papers in PubMed
5.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

65 citing papers in PubMed, 117 citations in OpenAlex.

  1. Article
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  10. Occurrence ofMicroorganisms · 2022
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  13. Genetic Diversity and Phylogeography ofFrontiers in cellular and infection microbiology · 2020
    Article
  14. Reassortment Between Divergent Strains of Camp Ripley Virus (Frontiers in cellular and infection microbiology · 2020
    Article
  15. Article
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  17. Viruses · 2019
    Article
  18. Article
  19. Article
  20. Review

5 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 3 countries.

Hae Ji KangPacific Center for Emerging Infectious Diseases Research, John A Burns School of Medicine, University of Hawaii at Manoa, Honolulu, HI, USA.
Shannon N Bennett
Laarni Sumibcay
Satoru Arai
Andrew G Hope
Gabor Mocz
Jin-Won Song
Joseph A Cook
Richard Yanagihara
University of Hawaiʻi at Mānoa · USUniversity of New Mexico · USKorea University · KRNational Institute of Infectious Diseases · JPPacific Biosciences (United States) · US

Funding

WORLDWIDE EPIDEMIOLOGY &EPIZOOTIOLOGY OF HANTAVIRUSG12RR003061 · NCRR · UNIVERSITY OF HAWAII AT MANOA · PI PANEE, JUN · 1986 to 2011
$32.3M
UHI COBRE: P3: GROUP A STREPT IN RELATION TO ACUTE RHEUMATIC FEVER IN HAWAIIP20RR018727 · NCRR · UNIVERSITY OF HAWAII AT MANOA · PI YANAGIHARA, RICHARD · 2003 to 2011
$13.8M
Intraspecies Transmission and Infectivity of Insectivore-Borne HantavirusesR01AI075057 · NIAID · UNIVERSITY OF HAWAII AT MANOA · PI YANAGIHARA, RICHARD · 2008 to 2011
$1.5M
NCRR NIH HHS G12 RR003061NCRR NIH HHS P20 RR018727NIAID NIH HHS R01 AI075057
6 · The paper itself

Abstract

backgroundThe discovery of genetically distinct hantaviruses in shrews (Order Soricomorpha, Family Soricidae) from widely separated geographic regions challenges the hypothesis that rodents (Order Rodentia, Family Muridae and Cricetidae) are the primordial reservoir hosts of hantaviruses and also predicts that other soricomorphs harbor hantaviruses. Recently, novel hantavirus genomes have been detected in moles of the Family Talpidae, including the Japanese shrew mole (Urotrichus talpoides) and American shrew mole (Neurotrichus gibbsii). We present new insights into the evolutionary history of hantaviruses gained from a highly divergent hantavirus, designated Nova virus (NVAV), identified in the European common mole (Talpa europaea) captured in Hungary. METHODOLOGY/PRINCIPAL

findingsPair-wise alignment and comparison of the full-length S- and L-genomic segments indicated moderately low sequence similarity of 54-65% and 46-63% at the nucleotide and amino acid levels, respectively, between NVAV and representative rodent- and soricid-borne hantaviruses. Despite the high degree of sequence divergence, the predicted secondary structure of the NVAV nucleocapsid protein exhibited the characteristic coiled-coil domains at the amino-terminal end, and the L-segment motifs, typically found in hantaviruses, were well conserved. Phylogenetic analyses, using maximum-likelihood and Bayesian methods, showed that NVAV formed a distinct clade that was evolutionarily distant from all other hantaviruses.

conclusionsNewly identified hantaviruses harbored by shrews and moles support long-standing virus-host relationships and suggest that ancestral soricomorphs, rather than rodents, may have been the early or original mammalian hosts.

Indexed as

Biological EvolutionAmino Acid SequenceAnimalsBase SequenceDNA PrimersMolecular Sequence DataMolesOrthohantavirusProtein Structure, SecondaryReverse Transcriptase Polymerase Chain ReactionSequence Homology, Amino AcidViral ProteinsDNA PrimersViral Proteins

Identifiers

PMID19582155
PMCPMC2702001
OpenAlexW2062308979

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.