Evidence map›Paper›PMID 19744926›Full record

ArticleThe Journal of biological chemistry2009

Diacylglycerol kinase epsilon is selective for both acyl chains of phosphatidic acid or diacylglycerol.

Michael Lung, Yulia V Shulga, Pavlina T Ivanova, David S Myers, Stephen B Milne, H Alex Brown, Matthew K Topham, Richard M Epand

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
3.0field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 67 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Article
  6. Article
  7. Review
  8. Diacylglycerol kinases regulate TRPV1 channel activity.The Journal of biological chemistry · 2020
    Article
  9. Article
  10. Article
  11. Review
  12. Review
  13. Diacylglycerol kinases: Relationship to other lipid kinases.Advances in biological regulation · 2019
    Review
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Diacylglycerol Kinase-ε: Properties and Biological Roles.Frontiers in cell and developmental biology · 2016
    Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Michael LungDepartment of Biochemistry and Biomedical Sciences, McMaster University, Hamilton, Ontario L8N 3Z5, Canada.
Yulia V Shulga
Pavlina T Ivanova
David S Myers
Stephen B Milne
H Alex Brown
Matthew K Topham
Richard M Epand
Vanderbilt University Medical Center · USMcMaster University · CAUniversity of Utah · US

Funding

STEROL LIPIDSU54GM069338 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI DENNIS, EDWARD A · 2003 to 2013
$72.2M
Diacylglycerol Kinase Delta in Growth and DevelopmentR01CA095463 · NCI · UNIVERSITY OF UTAH · PI TOPHAM, MATTHEW KENT · 2002 to 2011
$2.4M
NCI NIH HHS R01 CA095463NCI NIH HHS R01-CA95463NIGMS NIH HHS U54 GM069338
6 · The paper itself

Abstract

The phosphatidylinositol (PI) cycle mediates many cellular events by controlling the metabolism of many lipid second messengers. Diacylglycerol kinase epsilon (DGK epsilon) has an important role in this cycle. DGK epsilon is the only DGK isoform to show inhibition by its product phosphatidic acid (PA) as well as substrate specificity for sn-2 arachidonoyl-diacylglycerol (DAG). Here, we show that this inhibition and substrate specificity are both determined by selectivity for a combination of the sn-1 and sn-2 acyl chains of PA or DAG, respectively, preferring the most prevalent acyl chain composition of lipids involved specifically in the PI cycle, 1-stearoyl-2-arachidonoyl. Although the difference in rate for closely related lipid species is small, there is a significant enrichment of 1-stearoyl-2-arachidonoyl PI because of the cyclical nature of PI turnover. We also show that the inhibition of DGK epsilon by PA is competitive and that the deletion of the hydrophobic segment and cationic cluster of DGK epsilon does not affect its selectivity for the acyl chains of PA or DAG. Thus, this active site not only recognizes the lipid headgroup but also a combination of the two acyl chains in PA or DAG. We propose a mechanism of DGK epsilon regulation where its dual acyl chain selectivity is used to negatively regulate its enzymatic activity in a manner that ensures DGK epsilon remains committed to the PI turnover cycle. This novel mechanism of enzyme regulation within a signaling pathway could serve as a template for the regulation of enzymes in other pathways in the cell.

Indexed as

AnimalsCatalytic DomainChlorocebus aethiopsCOS CellsDiacylglycerol KinaseDiglyceridesHumansKineticsMolecular StructurePhosphatidic AcidsRecombinant ProteinsSubstrate SpecificityDGKE protein, humanDiacylglycerol KinaseDiglyceridesPhosphatidic AcidsRecombinant Proteins

Identifiers

PMID19744926
PMCPMC2781506
OpenAlexW2016355879

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.