Evidence map›Paper›PMID 19805241›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2009

In defense of statistical methods for detecting positive selection.

Ziheng Yang, Rasmus Nielsen, Nick Goldman

Abstract readCommentLetter
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Integrated structural and evolutionary analysis reveals common mechanisms underlying adaptive evolution in mammals.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Whole-genome sequencing of Theileria parva strains provides insight into parasite migration and diversification in the African continent.DNA research : an international journal for rapid publication of reports on genes and genomes · 2013
    Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Statistics and truth in phylogenomics.Molecular biology and evolution · 2012
    Review
  20. Dynamic programming procedure for searching optimal models to estimate substitution rates based on the maximum-likelihood method.Proceedings of the National Academy of Sciences of the United States of America · 2011
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

3 authors.

Ziheng Yang
Rasmus Nielsen
Nick Goldman

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

PubMed holds no abstract for this paper.

Indexed as

Models, GeneticResearch DesignSelection, GeneticComputer SimulationLikelihood FunctionsStatistics as Topic

Identifiers

PMID19805241
PMCPMC2741286

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.