Evidence map›Paper›PMID 19901026›Full record

ArticleThe Journal of biological chemistry2010

RNA polymerase II C-terminal heptarepeat domain Ser-7 phosphorylation is established in a mediator-dependent fashion.

Stefan Boeing, Caroline Rigault, Martin Heidemann, Dirk Eick, Michael Meisterernst

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
3.4field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 60 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
  4. Efficient Identification of theInternational journal of molecular sciences · 2022
    Article
  5. Review
  6. Review
  7. Review
  8. Review
  9. The essential and multifunctional TFIIH complex.Protein science : a publication of the Protein Society · 2018
    Review
  10. Ser7 of RNAPII-CTD facilitates heterochromatin formation by linking ncRNA to RNAi.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  11. Article
  12. Article
  13. Article
  14. The Mediator complex: a central integrator of transcription.Nature reviews. Molecular cell biology · 2015
    Review
  15. Article
  16. Article
  17. Article
  18. Review
  19. Article
  20. The Mediator complex and transcription elongation.Biochimica et biophysica acta · 2013
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Stefan BoeingInstitute of Molecular Tumor Biology, University of Muenster, Robert-Koch-Strasse 43, 48149 Muenster, Germany.
Caroline Rigault
Martin Heidemann
Dirk Eick
Michael Meisterernst
Institute of Molecular Biology · DECenter for Integrated Protein Science Munich · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The largest subunit of RNA polymerase II (RNAPII) C-terminal heptarepeat domain (CTD) is subject to phosphorylation during initiation and elongation of transcription by RNA polymerase II. Here we study the molecular mechanisms leading to phosphorylation of Ser-7 in the human enzyme. Ser-7 becomes phosphorylated before initiation of transcription at promoter regions. We identify cyclin-dependent kinase 7 (CDK7) as one responsible kinase. Phosphorylation of both Ser-5 and Ser-7 is fully dependent on the cofactor complex Mediator. A subform of Mediator associated with an active RNAPII is critical for preinitiation complex formation and CTD phosphorylation. The Mediator-RNAPII complex independently recruits TFIIB and CDK7 to core promoter regions. CDK7 phosphorylates Ser-7 selectively in the context of an intact preinitiation complex. CDK7 is not the only kinase that can modify Ser-7 of the CTD. ChIP experiments with chemical inhibitors provide evidence that other yet to be identified kinases further phosphorylate Ser-7 in coding regions.

Indexed as

Repetitive Sequences, Amino AcidCyclin-Dependent Kinase-Activating KinaseCyclin-Dependent KinasesDNAHeLa CellsHumansJurkat CellsMediator ComplexPhosphorylationProtein BindingProtein Structure, TertiaryPurinesRNA Polymerase IIRoscovitineSerineTemplates, GeneticCDK7 protein, humanCyclin-Dependent Kinase-Activating KinaseCyclin-Dependent KinasesDNAMediator ComplexPurinesRNA Polymerase IIRoscovitineSerineTranscription Factor TFIIH

Identifiers

PMID19901026
PMCPMC2804165
OpenAlexW1991340252

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.