Evidence map›Paper›PMID 20532200›Full record

ArticlePLoS genetics2010

The CFTR Met 470 allele is associated with lower birth rates in fertile men from a population isolate.

Gülüm Kosova, Joseph K Pickrell, Joanna L Kelley, Patrick F McArdle, Alan R Shuldiner, Mark Abney, Carole Ober

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
  2. Review
  3. Whole-Exome Sequencing IdentifiedFrontiers in genetics · 2021
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  4. Review
  5. Antagonistic Pleiotropy in Human Disease.Journal of molecular evolution · 2020
    Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Gülüm KosovaUniversity of Chicago, Illinois, United States of America. gulum@uchicago.edu <gulum@uchicago.edu>
Joseph K Pickrell
Joanna L Kelley
Patrick F McArdle
Alan R Shuldiner
Mark Abney
Carole Ober
University of Chicago · USUniversity of Maryland, Baltimore · USDePaul University · US

Funding

Genome-wide Search for CVD Gene-Environment InteractionsU01HL072515 · NHLBI · UNIVERSITY OF MARYLAND BALTIMORE · PI SHULDINER, ALAN R. · 2002 to 2008
$11.2M
Pharmacogenomics of CVD risk ReductionU01GM074518 · NIGMS · UNIVERSITY OF MARYLAND BALTIMORE · PI SHULDINER, ALAN R. · 2005 to 2009
$7.3M
Methods for Complex Trait Mapping in Large PedigreesR01HG002899 · NHGRI · UNIVERSITY OF CHICAGO · PI ABNEY, MARK A · 2004 to 2015
$3.5M
MOLECULAR GENETIC STUDIES OF FERTILITY IN THE HUTTERITESR01HD021244 · NICHD · UNIVERSITY OF CHICAGO · PI OBER, CAROLE · 1986 to 2011
$3.0M
NHGRI NIH HHS R01 HG002899NHGRI NIH HHS R01 HG02899NHLBI NIH HHS U01 HL072515NICHD NIH HHS R01 HD021244NICHD NIH HHS R01 HD21244NIGMS NIH HHS U01 GM074518
6 · The paper itself

Abstract

Although little is known about the role of the cystic fibrosis transmembrane regulator (CFTR) gene in reproductive physiology, numerous variants in this gene have been implicated in etiology of male infertility due to congenital bilateral absence of the vas deferens (CBAVD). Here, we studied the fertility effects of three CBAVD-associated CFTR polymorphisms, the (TG)m and polyT repeat polymorphisms in intron 8 and Met470Val in exon 10, in healthy men of European descent. Homozygosity for the Met470 allele was associated with lower birth rates, defined as the number of births per year of marriage (P = 0.0029). The Met470Val locus explained 4.36% of the phenotypic variance in birth rate, and men homozygous for the Met470 allele had 0.56 fewer children on average compared to Val470 carrier men. The derived Val470 allele occurs at high frequencies in non-African populations (allele frequency = 0.51 in HapMap CEU), whereas it is very rare in African population (Fst = 0.43 between HapMap CEU and YRI). In addition, haplotypes bearing Val470 show a lack of genetic diversity and are thus longer than haplotypes bearing Met470 (measured by an integrated haplotype score [iHS] of -1.93 in HapMap CEU). The fraction of SNPs in the HapMap Phase2 data set with more extreme Fst and iHS measures is 0.003, consistent with a selective sweep outside of Africa. The fertility advantage conferred by Val470 relative to Met470 may provide a selective mechanism for these population genetic observations.

Indexed as

Birth RateFertilizationGenetics, PopulationPolymorphism, GeneticAllelesCystic Fibrosis Transmembrane Conductance RegulatorHaplotypesHumansMaleMethionineCFTR protein, humanCystic Fibrosis Transmembrane Conductance RegulatorMethionine

Identifiers

PMID20532200
PMCPMC2880556
OpenAlexW2093681651

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.