Evidence map›Paper›PMID 20667828›Full record

ArticleThe Journal of biological chemistry2010

Structural basis of drug binding to CYP46A1, an enzyme that controls cholesterol turnover in the brain.

Natalia Mast, Casey Charvet, Irina A Pikuleva, C David Stout

Registry-linked trialOpen access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT03706885 (A Proof-of-Concept Clinical Research Study of Efavirenz in Patients With Alzheimer's Disease), which is not on this map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
4.4field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT03706885 phase1completednot on this mapstarted 2018, after this paper: background citation

A Proof-of-Concept Clinical Research Study of Efavirenz in Patients With Alzheimer's Disease

TypeinterventionalSponsorCase Western Reserve UniversityRan2018 to 2022Enrolled5ConditionsAlzheimer Disease, Early OnsetArmsSustiva Pill
3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 72 citations in OpenAlex.

  1. Review
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  4. Review
  5. Article
  6. Review
  7. Article
  8. Article
  9. Synthesis and pharmacokinetic study of aBioorganic & medicinal chemistry letters · 2020
    Article
  10. Cholesterol 24-Hydroxylation by CYP46A1: Benefits of Modulation for Brain Diseases.Neurotherapeutics : the journal of the American Society for Experimental NeuroTherapeutics · 2019
    Review
  11. Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. The Journal of biological chemistry · 2017
    Article
  17. Article
  18. Review
  19. Article
  20. 24(S)-Hydroxycholesterol as a Modulator of Neuronal Signaling and Survival.The Neuroscientist : a review journal bringing neurobiology, neurology and psychiatry · 2016
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Natalia MastDepartment of Ophthalmology and Visual Sciences, Case Western Reserve University, Cleveland, Ohio 44106, USA.
Casey Charvet
Irina A Pikuleva
C David Stout
Case Western Reserve University · USScripps Research Institute · US

Funding

Structure and function of cholesterol metabolizing P450sR01GM062882 · NIGMS · UNIVERSITY OF TEXAS MEDICAL BR GALVESTON · PI PIKULEVA, IRINA A · 2001 to 2019
$5.5M
VISUAL SCIENCES TRAINING PROGRAMT32EY007157 · NEI · CASE WESTERN RESERVE UNIVERSITY · PI Johannes Friedrich von Lintig · 2000 to 2026
$5.5M
Cholesterol-metabolizing P450s and Alzheimer's diseaseK02AG024336 · NIA · UNIVERSITY OF TEXAS MEDICAL BR GALVESTON · PI PIKULEVA, IRINA A · 2005 to 2009
$515k
NEI NIH HHS T32 EY007157NEI NIH HHS T32 EY07157NIA NIH HHS AG024336NIA NIH HHS K02 AG024336NIGMS NIH HHS GM62882NIGMS NIH HHS R01 GM062882
6 · The paper itself

Abstract

Cytochrome P450 46A1 (CYP46A1) initiates the major pathway of cholesterol elimination from the brain and thereby controls cholesterol turnover in this organ. We determined x-ray crystal structures of CYP46A1 in complex with four structurally distinct pharmaceuticals; antidepressant tranylcypromine (2.15 Å), anticonvulsant thioperamide (1.65 Å), antifungal voriconazole (2.35 Å), and antifungal clotrimazole (2.50 Å). All four drugs are nitrogen-containing compounds that have nanomolar affinity for CYP46A1 in vitro yet differ in size, shape, hydrophobicity, and type of the nitrogen ligand. Structures of the co-complexes demonstrate that each drug binds in a single orientation to the active site with tranylcypromine, thioperamide, and voriconazole coordinating the heme iron via their nitrogen atoms and clotrimazole being at a 4 Å distance from the heme iron. We show here that clotrimazole is also a substrate for CYP46A1. High affinity for CYP46A1 is determined by a set of specific interactions, some of which were further investigated by solution studies using structural analogs of the drugs and the T306A CYP46A1 mutant. Collectively, our results reveal how diverse inhibitors can be accommodated in the CYP46A1 active site and provide an explanation for the observed differences in the drug-induced spectral response. Co-complexes with tranylcypromine, thioperamide, and voriconazole represent the first structural characterization of the drug binding to a P450 enzyme.

Indexed as

Amino Acid SubstitutionAnticonvulsantsAntidepressive AgentsAntifungal AgentsBrainCatalytic DomainCholesterolCholesterol 24-HydroxylaseClotrimazoleCrystallography, X-RayHumansMutation, MissensePiperidinesProtein BindingPyrimidinesSteroid HydroxylasesAnticonvulsantsAntidepressive AgentsAntifungal AgentsCholesterolCholesterol 24-HydroxylaseClotrimazolePiperidinesPyrimidinesSteroid HydroxylasesthioperamideTranylcypromineTriazolesVoriconazole

Identifiers

PMID20667828
PMCPMC2951250
OpenAlexW1979556755

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.