Evidence map›Paper›PMID 20808282›Full record

ArticleThe EMBO journal2010

A multiprotein complex necessary for both transcription and DNA replication at the β-globin locus.

Subhradip Karmakar, Milind C Mahajan, Vincent Schulz, Gokul Boyapaty, Sherman M Weissman

Open access · bronzeAbstract read
In one paragraph

Article in The EMBO journal, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.5field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 31 citations in OpenAlex.

  1. Article
  2. Review
  3. Negative regulation ofTranslational pediatrics · 2023
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  11. The LMO2 oncogene regulates DNA replication in hematopoietic cells.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  12. Review
  13. Review
  14. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Subhradip KarmakarDepartment of Genetics, The Anlyan Center, Yale University School of Medicine, New Haven, CT, USA.
Milind C Mahajan
Vincent Schulz
Gokul Boyapaty
Sherman M Weissman
Yale University · US

Funding

HOX cluster intergenic non-coding RNAs in myeloid differentiation and functionR01DK054369 · NIDDK · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI NEWBURGER, PETER E, WEISSMAN, SHERMAN MORTON · 1999 to 2013
$7.2M
Yale Center of Excellence in Molecular HematologyP30DK072442 · NIDDK · YALE UNIVERSITY · PI KRAUSE, DIANE S · 2005 to 2010
$5.2M
Global Analysis of Chromatin during Lineage DevelopmentR01AG023111 · NIA · YALE UNIVERSITY · PI WEISSMAN, SHERMAN MORTON · 2004 to 2009
$2.9M
NIA NIH HHS R01 AG023111NIA NIH HHS R01-AG23111NIDDK NIH HHS DK072442NIDDK NIH HHS P30 DK072442NIDDK NIH HHS R01 DK054369NIDDK NIH HHS R01 DK54369
6 · The paper itself

Abstract

DNA replication, repair, transcription and chromatin structure are intricately associated nuclear processes, but the molecular links between these events are often obscure. In this study, we have surveyed the protein complexes that bind at β-globin locus control region, and purified and characterized the function of one such multiprotein complex from human erythroleukemic K562 cells. We further validated the existence of this complex in human CD34+ cell-derived normal erythroid cells. This complex contains ILF2/ILF3 transcription factors, p300 acetyltransferase and proteins associated with DNA replication, transcription and repair. RNAi knockdown of ILF2, a DNA-binding component of this complex, abrogates the recruitment of the complex to its cognate DNA sequence and inhibits transcription, histone acetylation and usage of the origin of DNA replication at the β-globin locus. These results imply a direct link between mammalian DNA replication, transcription and histone acetylation mediated by a single multiprotein complex.

Indexed as

beta-GlobinsCell Line, TumorDNA-Binding ProteinsDNA RepairDNA ReplicationHumansMultiprotein ComplexesNuclear Factor 45 ProteinNuclear Factor 90 ProteinsOligonucleotidesp300-CBP-Associated Factorp300-CBP Transcription FactorsRNA InterferenceTranscription, Geneticbeta-GlobinsDNA-Binding ProteinsILF2 protein, humanILF3 protein, humanMultiprotein ComplexesNuclear Factor 45 ProteinNuclear Factor 90 ProteinsOligonucleotidesp300-CBP-Associated Factorp300-CBP Transcription Factors

Identifiers

PMID20808282
PMCPMC2957209
OpenAlexW2027243820

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.