Evidence map›Paper›PMID 21030588›Full record

ArticleThe Journal of biological chemistry2011

Structural basis for c-KIT inhibition by the suppressor of cytokine signaling 6 (SOCS6) ubiquitin ligase.

Fahad Zadjali, Ashley C W Pike, Mattias Vesterlund, Jianmin Sun, Chenggang Wu, Shawn S C Li, Lars Rönnstrand, Stefan Knapp, Alex N Bullock, Amilcar Flores-Morales

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 79 citations in OpenAlex.

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  12. E3 Ligase Ligands for PROTACs: How They Were Found and How to Discover New Ones.SLAS discovery : advancing life sciences R & D · 2021
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 7 countries.

Fahad ZadjaliDepartment of Molecular Medicine and Surgery, Karolinska Institutet, SE-17177 Stockholm, Sweden.
Ashley C W Pike
Mattias Vesterlund
Jianmin Sun
Chenggang Wu
Shawn S C Li
Lars Rönnstrand
Stefan Knapp
Alex N Bullock
Amilcar Flores-Morales
University of Oxford · GBKarolinska Institutet · SELund University · SEWestern University · CAUniversity of Copenhagen · DK

Funding

Wellcome Trust
6 · The paper itself

Abstract

The c-KIT receptor tyrosine kinase mediates the cellular response to stem cell factor (SCF). Whereas c-KIT activity is important for the proliferation of hematopoietic cells, melanocytes and germ cells, uncontrolled c-KIT activity contributes to the growth of diverse human tumors. Suppressor of cytokine signaling 6 (SOCS6) is a member of the SOCS family of E3 ubiquitin ligases that can interact with c-KIT and suppress c-KIT-dependent pathways. Here, we analyzed the molecular mechanisms that determine SOCS6 substrate recognition. Our results show that the SH2 domain of SOCS6 is essential for its interaction with c-KIT pY568. The 1.45-Å crystal structure of SOCS6 SH2 domain bound to the c-KIT substrate peptide (c-KIT residues 564-574) revealed a highly complementary and specific interface giving rise to a high affinity interaction (K(d) = 0.3 μm). Interestingly, the SH2 binding pocket extends to substrate residue position pY+6 and envelopes the c-KIT phosphopeptide with a large BG loop insertion that contributes significantly to substrate interaction. We demonstrate that SOCS6 has ubiquitin ligase activity toward c-KIT and regulates c-KIT protein turnover in cells. Our data support a role of SOCS6 as a feedback inhibitor of SCF-dependent signaling and provides molecular data to account for target specificity within the SOCS family of ubiquitin ligases.

Indexed as

Amino Acid SequenceHEK293 CellsHumansModels, MolecularMolecular Sequence DataPhosphopeptidesProtein Tyrosine Phosphatase, Non-Receptor Type 11Proto-Oncogene Proteins c-kitSignal Transductionsrc Homology DomainsStem Cell FactorSubstrate SpecificitySuppressor of Cytokine Signaling 3 ProteinSuppressor of Cytokine Signaling ProteinsUbiquitinationPhosphopeptidesProtein Tyrosine Phosphatase, Non-Receptor Type 11Proto-Oncogene Proteins c-kitSOCS3 protein, humanSOCS6 protein, humanStem Cell FactorSuppressor of Cytokine Signaling 3 ProteinSuppressor of Cytokine Signaling Proteins

Identifiers

PMID21030588
PMCPMC3013007
OpenAlexW2030849371

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.