Evidence map›Paper›PMID 21153715›Full record

ArticleMolecular biotechnology2011

A flexible approach to studying post-transcriptional gene regulation in stably transfected mammalian cells.

Ralph C Nichols, John Botson, Xiao Wei Wang, B JoNell Hamilton, Jane E Collins, Victoria Uribe, Seth A Brooks, Moe Zan, William F C Rigby

Open access · greenAbstract read
In one paragraph

Article in Molecular biotechnology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.5field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 7 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Ralph C NicholsVeterans Administration Research Service, Veterans Affairs Medical Center, Mailstop 151, 215 North Main Street, White River Junction, VT 05009-0001, USA. ralph.c.nichols@dartmouth.edu
John Botson
Xiao Wei Wang
B JoNell Hamilton
Jane E Collins
Victoria Uribe
Seth A Brooks
Moe Zan
William F C Rigby
Dartmouth Psychiatric Research Center · USDartmouth College · US

Funding

Translational Engineering in Cancer (TEC)P30CA023108 · NCI · DARTMOUTH COLLEGE · PI Fred W Kolling IV · 1985 to 2026
$91.3M
VASCULAR LEUKOCYTES: BASIC IMMUNOBIOLOGY AND FUNCTIONAL PLASTICITYP20RR016437 · NCRR · DARTMOUTH COLLEGE · PI LEIB, DAVID A · 2001 to 2010
$24.3M
IMMUNOBIOLOGY OF MYELOID AND LYMPHOID CELLST32AI007363 · NIAID · DARTMOUTH COLLEGE · PI Claudia V Jakubzick · 1990 to 2026
$9.5M
REGULATION OF CD154 EXPRESSIONR01AR049834 · NIAMS · DARTMOUTH COLLEGE · PI RIGBY, WILLIAM FREDERICK CARSON · 2003 to 2010
$2.4M
AUTOIMMUNITY &CONNECTIVE TISSUE BIOLOGY TRAININGT32AR007576 · NIAMS · DARTMOUTH COLLEGE · PI RIGBY, WILLIAM FREDERICK CARSON · 1994 to 2008
$1.7M
Novel Targets of the Von Hippel Lindau GeneR01CA095539 · NCI · DARTMOUTH COLLEGE · PI RIGBY, WILLIAM FREDERICK CARSON · 2002 to 2006
$1.4M
ELICITATION OF PROTECTIVE IMMUNITY TO CHLAMYDIA TRACHOMATIS BY DNA VACCINATIONZ01AI000736 · NIAID · NIAID EXTRAMURAL ACTIVITIES · PI PERRY, L L · 1996 to 1996
–
NCI NIH HHS P30 CA023108NCI NIH HHS R01 CA095539NCRR NIH HHS P20 RR016437NCRR NIH HHS P20RR16437NIAID NIH HHS T32 AI00736NIAID NIH HHS T32 AI007363NIAMS NIH HHS R01 AR049834NIAMS NIH HHS R01AR49834NIAMS NIH HHS T32 AR007576
6 · The paper itself

Abstract

The study of post-transcriptional regulation is constrained by the technical limitations associated with both transient and stable transfection of chimeric reporter plasmids examining the activity of 3'-UTR cis-acting elements. We report the adaptation of a commercially available system that enables consistent stable integration of chimeric reporter cDNA into a single genomic site in which transcription is induced by tetracycline. Using this system, we demonstrate the tight control afforded by this system and its suitability in mapping the regulatory function of defined cis-acting elements in the human TNF 3'-UTR, as well as the distinct effects of serum starvation on transiently transfected and stably integrated chimeric reporter genes.

Indexed as

Gene Expression Regulation3' Untranslated RegionsBase SequenceData Interpretation, StatisticalFlow CytometryGreen Fluorescent ProteinsHEK293 CellsHumansModels, GeneticMolecular BiologyMolecular Sequence DataRegulatory Elements, TranscriptionalRNA, MessengerTumor Necrosis Factor-alpha3' Untranslated RegionsGreen Fluorescent ProteinsRNA, MessengerTumor Necrosis Factor-alpha

Identifiers

PMID21153715
PMCPMC3786348
OpenAlexW2090683698

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.