Evidence map›Paper›PMID 21245040›Full record

ArticleNucleic acids research2011

A cytoplasm-specific activity encoded by the Trithorax-like ATX1 gene.

Ivan Ndamukong, Hanna Lapko, Ronald L Cerny, Zoya Avramova

Abstract read
In one paragraph

Article in Nucleic acids research, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Comparative TSS-seq analysis among natural variations ofNAR genomics and bioinformatics · 2025
    Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Ivan NdamukongSchool of Biological Sciences, University of Nebraska, Lincoln, Nebraska, USA.
Hanna Lapko
Ronald L Cerny
Zoya Avramova

Funding

VIRAL SHUTOFF OF HOST TRANSCRIPTION--PBCV-1 INFECTEDP20RR015635 · NCRR · UNIVERSITY OF NEBRASKA LINCOLN · PI ZHOU, YOU · 2000 to 2009
$22.1M
EXTRAMURAL RESEARCH FACILITIES CONSTRUCTIONC06RR015468 · NCRR · UNIVERSITY OF NEBRASKA LINCOLN · PI PAUL, PREM S · 2000 to 2000
$2.0M
NCRR NIH HHS P20 RR15635NCRR NIH HHS RR015468-01
6 · The paper itself

Abstract

Eukaryotes produce multiple products from a single gene locus by alternative splicing, translation or promoter usage as mechanisms expanding the complexity of their proteome. Trithorax proteins, including the Arabidopsis Trithorax-like protein ATX1, are histone modifiers regulating gene activity. Here, we report that a novel member of the Trithorax family has a role unrelated to chromatin. It is encoded from an internal promoter in the ATX1 locus as an isoform containing only the SET domain (soloSET). It is located exclusively in the cytoplasm and its substrate is the elongation factor 1A (EF1A). Loss of SET, but not of the histone modifying ATX1-SET activity, affects cytoskeletal actin bundling illustrating that the two isoforms have distinct functions in Arabidopsis cells.

Indexed as

Actin CytoskeletonArabidopsisArabidopsis ProteinsCytoplasmHistone-Lysine N-MethyltransferaseMethylationMutationPeptide Elongation Factor 1Promoter Regions, GeneticProtein IsoformsProtein Structure, TertiaryTranscription FactorsArabidopsis ProteinsAt2g31650 protein, ArabidopsisHistone-Lysine N-MethyltransferasePeptide Elongation Factor 1Protein IsoformsTranscription Factors

Identifiers

PMID21245040
PMCPMC3113559

What Socratic holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.