Evidence map›Paper›PMID 21471238›Full record

ArticleJournal of virology2011

Temporal profiling of the coding and noncoding murine cytomegalovirus transcriptomes.

Paul Lacaze, Thorsten Forster, Alan Ross, Lorraine E Kerr, Eliane Salvo-Chirnside, Vanda Juranic Lisnic, Guillermo H López-Campos, José J García-Ramírez, Martin Messerle, Joanne Trgovcich and 2 more

Open access · greenAbstract read
In one paragraph

Article in Journal of virology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
1.4field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 35 citations in OpenAlex.

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  5. Decoding murine cytomegalovirus.PLoS pathogens · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 6 institutions in 5 countries.

Paul LacazeDivision of Pathway Medicine, University of Edinburgh Medical School, The Chancellor's Building, 49 Little France Crescent, Edinburgh EH16 4SB, United Kingdom.
Thorsten Forster
Alan Ross
Lorraine E Kerr
Eliane Salvo-Chirnside
Vanda Juranic Lisnic
Guillermo H López-Campos
José J García-Ramírez
Martin Messerle
Joanne Trgovcich
Ana Angulo
Peter Ghazal
University of Edinburgh · GBUniversity of Castilla-La Mancha · ESConsorci Institut D'Investigacions Biomediques August Pi I Sunyer · ESMedizinische Hochschule Hannover · DEThe Ohio State University · USUniversity of Rijeka · HR

Funding

Biotechnology and Biological Sciences Research Council BB/D019621Biotechnology and Biological Sciences Research Council BB/D019621/1Wellcome TrustWellcome Trust 066784/Z/02/Z
6 · The paper itself

Abstract

The global transcriptional program of murine cytomegalovirus (MCMV), involving coding, noncoding, and antisense transcription, remains unknown. Here we report an oligonucleotide custom microarray platform capable of measuring both coding and noncoding transcription on a genome-wide scale. By profiling MCMV wild-type and immediate-early mutant strains in fibroblasts, we found rapid activation of the transcriptome by 6.5 h postinfection, with absolute dependency on ie3, but not ie1 or ie2, for genomic programming of viral gene expression. Evidence is also presented to show, for the first time, genome-wide noncoding and bidirectional transcription at late stages of MCMV infection.

Indexed as

Gene Expression ProfilingGene Expression Regulation, ViralAnimalsFibroblastsGenome, ViralHerpesviridae InfectionsImmediate-Early ProteinsMiceMuromegalovirusMutationNIH 3T3 CellsOligonucleotide Array Sequence AnalysisTime FactorsViral ProteinsImmediate-Early ProteinsViral Proteins

Identifiers

PMID21471238
PMCPMC3126304
OpenAlexW2160321820

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.