Evidence map›Paper›PMID 21802003›Full record

ArticleChemistry & biology2011

Discovery and characterization of 2-aminobenzimidazole derivatives as selective NOD1 inhibitors.

Ricardo G Correa, Pasha M Khan, Nadav Askari, Dayong Zhai, Motti Gerlic, Brock Brown, Gavin Magnuson, Roberto Spreafico, Salvatore Albani, Eduard Sergienko and 3 more

Abstract read
In one paragraph

Article in Chemistry & biology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
2.3field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 55 citations in OpenAlex.

  1. Article
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  15. Article
  16. Nucleotide-binding oligomerization domain 1 and gastrointestinal disorders.Proceedings of the Japan Academy. Series B, Physical and biological sciences · 2017
    Review
  17. Role of nucleotide-binding oligomerization domain 1 (NOD1) and its variants in human cytomegalovirus control in vitro and in vivo.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 2 institutions in 1 country.

Ricardo G CorreaSanford-Burnham Medical Research Institute, La Jolla, CA 92037, USA.
Pasha M Khan
Nadav Askari
Dayong Zhai
Motti Gerlic
Brock Brown
Gavin Magnuson
Roberto Spreafico
Salvatore Albani
Eduard Sergienko
Paul W Diaz
Gregory P Roth
John C Reed
Sanford Burnham Prebys Medical Discovery Institute · USJoint Center for Structural Genomics · US

Funding

Sanford-Burnham Center for Chemical GenomicsU54HG005033 · NHGRI · SANFORD BURNHAM PREBYS MEDICAL DISCOVERY INSTITUTE · PI JACKSON, MICHAEL · 2008 to 2012
$72.5M
SAN DIEGO CHEMICAL LIBRARY SCREENING CENTER(RMI)U54HG003916 · NHGRI · SANFORD BURNHAM PREBYS MEDICAL DISCOVERY INSTITUTE · PI REED, JOHN C · 2005 to 2007
$12.7M
High Throughput Screening Assays for NOD1 and NOD2 InhibitorsR03MH084844 · NIMH · SANFORD BURNHAM PREBYS MEDICAL DISCOVERY INSTITUTE · PI REED, JOHN C · 2008 to 2008
$25k
NHGRI NIH HHS U54 HG003916NHGRI NIH HHS U54 HG005033NIMH NIH HHS MH084844
6 · The paper itself

Abstract

NLR family proteins play important roles in innate immune response. NOD1 (NLRC1) activates various signaling pathways including NF-κB in response to bacterial ligands. Hereditary polymorphisms in the NOD1 gene are associated with asthma, inflammatory bowel disease, and other disorders. Using a high throughput screening (HTS) assay measuring NOD1-induced NF-κB reporter gene activity, followed by multiple downstream counter screens that eliminated compounds impacting other NF-κB effectors, 2-aminobenzimidazole compounds were identified that selectively inhibit NOD1. Mechanistic studies of a prototypical compound, Nodinitib-1 (ML130; CID-1088438), suggest that these small molecules cause conformational changes of NOD1 in vitro and alter NOD1 subcellular targeting in cells. Altogether, this inaugural class of inhibitors provides chemical probes for interrogating mechanisms regulating NOD1 activity and tools for exploring the roles of NOD1 in various infectious and inflammatory diseases.

Indexed as

BenzimidazolesCell LineCells, CulturedDendritic CellsDrug Evaluation, PreclinicalGenes, ReporterHigh-Throughput Screening AssaysHumansNF-kappa BNod1 Signaling Adaptor ProteinSignal Transduction2-aminobenzimidazoleBenzimidazolesNF-kappa BNod1 Signaling Adaptor Protein

Identifiers

PMID21802003
PMCPMC3152441
OpenAlexW2154163458

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.