Evidence map›Paper›PMID 21829362›Full record

ArticlePLoS pathogens2011

Crystal structure of PrgI-SipD: insight into a secretion competent state of the type three secretion system needle tip and its interaction with host ligands.

Michele Lunelli, Robert Hurwitz, Jutta Lambers, Michael Kolbe

Open access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed, 1 pooled it
4.6field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 1 synthesis or guideline pooled it, 68 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Infection biology ofEcoSal Plus · 2024
    Review
  4. Article
  5. Article
  6. Cryo-EM of the injectisome and type III secretion systems.Current opinion in structural biology · 2022
    Review
  7. Article
  8. Cryo-EM structure of the needle filament tip complex of theProceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  9. Review
  10. Article
  11. Review
  12. Frontiers in microbiology · 2020
    Review
  13. The type III secretion system needle, tip, and translocon.Protein science : a publication of the Protein Society · 2019
    Review
  14. Article
  15. Review
  16. Frontiers in cellular and infection microbiology · 2019
    Review
  17. Review
  18. Single-domain antibodies pinpoint potential targets withinThe Journal of biological chemistry · 2017
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Michele LunelliMax Planck Institute for Infection Biology, Department of Cellular Microbiology, Berlin, Germany.
Robert Hurwitz
Jutta Lambers
Michael Kolbe
Max Planck Institute for Infection Biology · DEMax Planck Society · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Many infectious gram-negative bacteria, including Salmonella typhimurium, require a Type Three Secretion System (T3SS) to translocate virulence factors into host cells. The T3SS consists of a membrane protein complex and an extracellular needle together that form a continuous channel. Regulated secretion of virulence factors requires the presence of SipD at the T3SS needle tip in S. typhimurium. Here we report three-dimensional structures of individual SipD, SipD in fusion with the needle subunit PrgI, and of SipD:PrgI in complex with the bile salt, deoxycholate. Assembly of the complex involves major conformational changes in both SipD and PrgI. This rearrangement is mediated via a π bulge in the central SipD helix and is stabilized by conserved amino acids that may allow for specificity in the assembly and composition of the tip proteins. Five copies each of the needle subunit PrgI and SipD form the T3SS needle tip complex. Using surface plasmon resonance spectroscopy and crystal structure analysis we found that the T3SS needle tip complex binds deoxycholate with micromolar affinity via a cleft formed at the SipD:PrgI interface. In the structure-based three-dimensional model of the T3SS needle tip, the bound deoxycholate faces the host membrane. Recently, binding of SipD with bile salts present in the gut was shown to impede bacterial infection. Binding of bile salts to the SipD:PrgI interface in this particular arrangement may thus inhibit the T3SS function. The structures presented in this study provide insight into the open state of the T3SS needle tip. Our findings present the atomic details of the T3SS arrangement occurring at the pathogen-host interface.

Indexed as

AnimalsAntigens, BacterialBacterial ProteinsBacterial Secretion SystemsCrystallography, X-RayDeoxycholic AcidHost-Pathogen InteractionsMembrane ProteinsMembranesProtein Structure, QuaternaryProtein Structure, SecondaryProtein SubunitsRecombinant Fusion ProteinsSalmonella typhimuriumSurface Plasmon ResonanceAntigens, BacterialBacterial ProteinsBacterial Secretion SystemsDeoxycholic AcidMembrane ProteinsProtein SubunitsRecombinant Fusion ProteinsSspD protein, Salmonella typhimurium

Identifiers

PMID21829362
PMCPMC3150277
OpenAlexW1976406379

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.