Evidence map›Paper›PMID 21880089›Full record

ArticleMolecular ecology2011

Spatial but not temporal co-divergence of a virus and its mammalian host.

Fernando Torres-Pérez, R Eduardo Palma, Brian Hjelle, Edward C Holmes, Joseph A Cook

Abstract read
In one paragraph

Article in Molecular ecology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Article
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  7. Article
  8. Genetic Diversity of Artybash Virus in the Laxmann's Shrew (Sorex caecutiens).Vector borne and zoonotic diseases (Larchmont, N.Y.) · 2016
    Article
  9. Article
  10. Article
  11. Article
  12. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Fernando Torres-PérezInstituto de Biología, Pontificia Universidad Católica de Valparaíso, Valparaíso, Chile. fernando.torres@ucv.cl
R Eduardo Palma
Brian Hjelle
Edward C Holmes
Joseph A Cook

Funding

VIROLOGISTP20RR016466 · NCRR · UNIVERSITY OF ALASKA FAIRBANKS · PI BURKHEAD, JASON L · 2001 to 2011
$37.0M
Virology/Immunology CoreU19AI045452 · NIAID · UNIVERSITY OF NEW MEXICO · PI MERTZ, GREGORY JAMES · 1999 to 2009
$8.7M
The Evolutionary and Biological Bases of Host Switching in VirusesR01GM080533 · NIGMS · PENNSYLVANIA STATE UNIVERSITY, THE · PI PARRISH, COLIN R. · 2007 to 2019
$4.1M
Postdoctoral Training in the Hantavirus Project EcologyD43TW007131 · FIC · UNIVERSITY OF NEW MEXICO · PI MERTZ, GREGORY JAMES · 2004 to 2004
$50k
FIC NIH HHS D43 TW007131NCRR NIH HHS P20 RR016466NCRR NIH HHS P20RR016466NIAID NIH HHS 1 U19 AI45452-01NIAID NIH HHS U19 AI045452NIGMS NIH HHS GM080533-04NIGMS NIH HHS R01 GM080533
6 · The paper itself

Abstract

Co-divergence between host and parasites suggests that evolutionary processes act across similar spatial and temporal scales. Although there has been considerable work on the extent and correlates of co-divergence of RNA viruses and their mammalian hosts, relatively little is known about the extent to which virus evolution is determined by the phylogeographic history of host species. To test hypotheses related to co-divergence across a variety of spatial and temporal scales, we explored phylogenetic signatures in Andes virus (ANDV) sampled from Chile and its host rodent, Oligoryzomys longicaudatus. ANDV showed strong spatial subdivision, a phylogeographic pattern also recovered in the host using both spatial and genealogical approaches, and despite incomplete lineage sorting. Lineage structure in the virus seemed to be a response to current population dynamics in the host at the spatial scale of ecoregions. However, finer scale analyses revealed contrasting patterns of genetic structure across a latitudinal gradient. As predicted by their higher substitution rates, ANDV showed greater genealogical resolution than the rodent, with topological congruence influenced by the degree of lineage sorting within the host. However, despite these major differences in evolutionary dynamics, the geographic structure of host and virus converged across large spatial scales.

Indexed as

PhylogenyAnimalsArvicolinaeOrthohantavirusPopulation DynamicsSelection, Genetic

Identifiers

PMID21880089
PMCPMC3183239

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.