Evidence map›Paper›PMID 22095085›Full record

ArticleGenetics2012

MicroRNA transgene overexpression complements deficiency-based modifier screens in Drosophila.

Sébastien Szuplewski, Jan-Michael Kugler, Sing Fee Lim, Pushpa Verma, Ya-Wen Chen, Stephen M Cohen

Open access · bronzeAbstract read
In one paragraph

Article in Genetics, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
2.5field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 30 citations in OpenAlex.

  1. Resources and Methods for the Analysis of MicroRNA Function in Drosophila.Methods in molecular biology (Clifton, N.J.) · 2022
    Review
  2. Review
  3. Article
  4. Review
  5. Evolutionary Transitions of MicroRNA-Target Pairs.Genome biology and evolution · 2016
    Article
  6. Article
  7. Glial cell regulation of rhythmic behavior.Methods in enzymology · 2015
    Review
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Adult-specific functions of animal microRNAs.Nature reviews. Genetics · 2013
    Review
  14. Article
  15. Article
  16. Article
  17. Review
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Sébastien SzuplewskiInstitute of Molecular and Cell Biology, Singapore 138673.
Jan-Michael Kugler
Sing Fee Lim
Pushpa Verma
Ya-Wen Chen
Stephen M Cohen
Institute of Molecular and Cell Biology · SGNational University of Singapore · SG

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Dosage-sensitive modifier screening is a powerful tool for linking genes to biological processes. Use of chromosomal deletions permits sampling the effects of removing groups of genes related by position on the chromosome. Here, we explore the use of inducible microRNA transgenes as a complement to deficiency-based modifier screens. miRNAs are predicted to have hundreds of targets. miRNA overexpression provides an efficient means to reduces expression of large gene sets. A collection of transgenes was prepared to allow overexpression of 89 miRNAs or miRNA clusters. These transgenes and a set of genomic deficiencies were screened for their ability to modify the bristle phenotype of the cell-cycle regulator minus. Sixteen miRNAs were identified as dominant suppressors, while the deficiency screen uncovered four genomic regions that contain a dominant suppressor. Comparing the genes uncovered by the deletions with predicted miRNA targets uncovered a small set of candidate suppressors. Two candidates were identified as suppressors of the minus phenotype, Cullin-4 and CG5199/Cut8. Additionally, we show that Cullin-4 acts through its substrate receptor Cdt2 to suppress the minus phenotype. We suggest that inducible microRNA transgenes are a useful complement to deficiency-based modifier screens.

Indexed as

TransgenesAnimalsBase SequenceCaenorhabditis elegans ProteinsCell Cycle ProteinsDrosophilaDrosophila ProteinsFemaleGene DosageGene ExpressionGene OrderGenetic VectorsHeat-Shock ProteinsLigasesMaleMicroRNAsCaenorhabditis elegans ProteinsCell Cycle ProteinsCul-4 protein, C elegansDrosophila ProteinsHeat-Shock Proteinsl(2)dtl protein, DrosophilaLigasesMicroRNAsmi protein, Drosophila

Identifiers

PMID22095085
PMCPMC3276628
OpenAlexW2086207801

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.