Evidence map›Paper›PMID 22167239›Full record

ArticlePlant cell reports2012

Identification and characterization of annexin gene family in rice.

Sravan Kumar Jami, Greg B Clark, Belay T Ayele, Stanley J Roux, P B Kirti

Abstract read
PubMed Publisher
In one paragraph

Article in Plant cell reports, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed, 1 pooled it
1.6field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 1 synthesis or guideline pooled it, 96 citations in OpenAlex.

  1. Pearl millet response to drought: A review.Frontiers in plant science · 2023
    Pooled it
  2. Comprehensive Analysis of Annexin Family fromPlants (Basel, Switzerland) · 2026
    Article
  3. Article
  4. Genome-Wide Characterization of thePlants (Basel, Switzerland) · 2025
    Article
  5. Annexins: central regulators of plant growth and stress signaling.Acta biochimica et biophysica Sinica · 2025
    Review
  6. Review
  7. Genome-Wide Identification of theInternational journal of molecular sciences · 2024
    Article
  8. Calcium Signaling and the Response to Heat Shock in Crop Plants.International journal of molecular sciences · 2023
    Review
  9. Article
  10. The Wheat AnnexinInternational journal of molecular sciences · 2023
    Article
  11. The rice annexin genePlant direct · 2023
    Article
  12. Article
  13. Structure, Function, and Applications of Soybean Calcium Transporters.International journal of molecular sciences · 2022
    Review
  14. Article
  15. Article
  16. Characterization ofPhysiology and molecular biology of plants : an international journal of functional plant biology · 2021
    Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 3 countries.

Sravan Kumar JamiDepartment of Plant Science, University of Manitoba, Winnipeg, MB R3T 2N2, Canada. jami@cc.umanitoba.ca
Greg B Clark
Belay T Ayele
Stanley J Roux
P B Kirti
The University of Texas at Austin · USUniversity of Manitoba · CAUniversity of Hyderabad · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Plant annexins are Ca(2+)-dependent phospholipid-binding proteins and are encoded by multigene families. They are implicated in the regulation of plant development as well as protection from drought and other stresses. They are well characterized in Arabidopsis, however no such characterization of rice annexin gene family has been reported thus far. With the availability of the rice genome sequence information, we have identified ten members of the rice annexin gene family. At the protein level, they share 16-64% identity with predicted molecular masses ranging from 32 to 40 kDa. Phylogenetic analysis of rice annexins together with annexins from other monocots led to their classification into five different orthologous groups and share similar motif patterns in their protein sequences. Expression analysis by real-time RT-PCR revealed differential temporal and spatial regulation of these genes. The rice annexin genes are also found to be regulated in seedling stage by various abiotic stressors including salinity, drought, heat and cold. Additionally, in silico analysis of the putative upstream sequences was analyzed for the presence of stress-responsive cis-elements. These results provide a basis for further functional characterization of specific rice annexin genes at the tissue/developmental level and in response to abiotic stresses.

Indexed as

Multigene FamilyAmino Acid SequenceAnnexinsConserved SequenceGene Expression Regulation, DevelopmentalGene Expression Regulation, PlantGenome, PlantMolecular Sequence DataOryzaPhylogenyPromoter Regions, GeneticSeedlingsSequence AlignmentSequence Analysis, ProteinStress, PhysiologicalAnnexins

Identifiers

PMID22167239
OpenAlexW2017378415

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.