Evidence map›Paper›PMID 22587329›Full record

ArticleDevelopment, growth & differentiation2012

Identification of 3'UTR sequence elements and a teloplasm localization motif sufficient for the localization of Hro-twist mRNA to the zygotic animal and vegetal poles.

Mehrin Farooq, Jonathan Choi, Agustin I Seoane, Roberto A Lleras, Hoan V Tran, Stephanie A Mandal, Christine L Nelson, Julio G Soto

Open access · greenAbstract read
In one paragraph

Article in Development, growth & differentiation, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact, top 91% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Mehrin FarooqBiological Sciences Department, San Jose State University, San Jose, CA 95192-0100, USA.
Jonathan Choi
Agustin I Seoane
Roberto A Lleras
Hoan V Tran
Stephanie A Mandal
Christine L Nelson
Julio G Soto
San Jose State University · US

Funding

San Jose State University Undergraduate MBRS RISE ProgramR25GM071381 · NIGMS · SAN JOSE STATE UNIVERSITY · PI SINGMASTER, KAREN A · 2008 to 2021
$6.3M
YEAST CHROMATIN STRUCTURE: RECONSTITUTION EXPERIMENTSS06GM008192 · NIGMS · SAN JOSE STATE UNIVERSITY · PI SILBER, HERBERT BRUCE · 1989 to 2009
$6.3M
NIGMS NIH HHS 2SO6 GM 008192NIGMS NIH HHS 3S06GM008192-27S1NIGMS NIH HHS R25 GM071381NIGMS NIH HHS S06 GM008192
6 · The paper itself

Abstract

The early localization of mRNA transcripts is critical in sorting cell fate determinants in the developing embryo. In the glossiphoniid leech, Helobdella robusta, maternal mRNAs, such as Hro-twist, localize to the zygotic teloplasm. Ten seven nucleotide repeat elements (AAUAAUA) called ARE2 and a predicted secondary structural motif, called teloplasm localization motif (TLM), are present in the 3'UTR of Hro-twist mRNA. We used site-directed mutagenesis, deletions, and microinjection of labeled, exogenous transcripts to determine if ARE2 elements, and the TLM, play a role in Hro-twist mRNA localization. Deleting the poly-A tail and the cytoplasmic polyadenylation element (CPE) had no effect on Hro-twist mRNA localization. Site-directed mutagenesis of nucleotides that altered ARE2 element sequences or the TLM suggest that the ARE2 elements and the TLM are important for Hro-twist mRNA localization to the teloplasm of pre-cleavage zygotes. Hro-Twist protein expression data suggest that the localization of Hro-twist transcripts in zygotes and stage two embryos is not involved in ensuring mesoderm specification, as Hro-Twist protein is expressed uniformly in most cells before gastrulation. Our data may support a shared molecular mechanism for leech transcripts that localize to the teloplasm.

Indexed as

3' Untranslated RegionsGene Expression Regulation, DevelopmentalRNA TransportAnimalsBody PatterningCloning, MolecularComputational BiologyEmbryonic DevelopmentEmbryo, NonmammalianLeechesMesodermMutagenesis, Site-DirectedNucleotide MotifsPoint MutationProtein Structure, SecondaryRepetitive Sequences, Nucleic Acid3' Untranslated RegionsRNA, MessengerTwist-Related Protein 1

Identifiers

PMID22587329
PMCPMC3354766
OpenAlexW1999575480

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.