ArticlePloS one2012
A complete sequence and transcriptomic analyses of date palm (Phoenix dactylifera L.) mitochondrial genome.
Article in PloS one, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 65 papers.
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65 citing papers in PubMed.
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- Pan-mitogenome in Dipterocarpoideae: mitochondrial plastid DNAs and repeats shape the dynamic evolution of mitogenomes.BMC plant biology · 2025Article
- Assembly and comparative analysis of the first complete mitochondrial genome of Camellia sinensis var. assamica 'Hainan Dayezhong', endemic to Hainan Province, China.BMC plant biology · 2025Article
- Assembly and Comparative Analysis of Complete Mitochondrial Genome Sequence of Endangered Medicinal PlantCurrent issues in molecular biology · 2025Article
- Comparative Genomics and Draft Genome Assembly of the Elite Tunisian Date Palm Cultivar Deglet Nour: Insights into the Genetic Variations Linked to Fruit Ripening and Quality Traits.International journal of molecular sciences · 2025Article
- Genome-wide and transcriptome analysis of PdWRKY transcription factors in date palm (Phoenix dactylifera) revealing insights into heat and drought stress tolerance.BMC genomics · 2025Article
- Assembly and comparative analysis of the complete mitochondrial genome of Cardiocrinum giganteum: a primitive Liliaceae group with significant scientific research value.BMC genomics · 2025Article
- Comparative analyses of the organelle genomes inFrontiers in plant science · 2025Article
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- Genome-wide identification and in silico characterization of major RNAi gene families in date palm (Phoenix dactylifera).BMC genomic data · 2024Article
- Date palm transcriptome analysis provides new insights on changes in response to high salt stress of colonized roots with the endophytic fungusFrontiers in plant science · 2024Article
- Whole mitochondrial and chloroplast genome sequencing of Tunisian date palm cultivars: diversity and evolutionary relationships.BMC genomics · 2023Article
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- Genomics and Transcriptomics Reveal Genetic Contribution to Population Diversity and Specific Traits in Coconut.Plants (Basel, Switzerland) · 2023Review
- Multichromosomal Mitochondrial Genome ofInternational journal of molecular sciences · 2023Article
- Mitochondrial genome sequencing and analysis of the invasivebioRxiv : the preprint server for biology · 2023Article
- The complete mitochondrial genome ofMitochondrial DNA. Part B, Resources · 2023Article
- Comparative analysis of the complete mitogenome ofFrontiers in genetics · 2023Article
- The Mitogenome ofBiology · 2022Article
5 more citing papers are in PubMed but not listed here.
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Authors and funding
11 authors.
Funding
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Abstract
Based on next-generation sequencing data, we assembled the mitochondrial (mt) genome of date palm (Phoenix dactylifera L.) into a circular molecule of 715,001 bp in length. The mt genome of P. dactylifera encodes 38 proteins, 30 tRNAs, and 3 ribosomal RNAs, which constitute a gene content of 6.5% (46,770 bp) over the full length. The rest, 93.5% of the genome sequence, is comprised of cp (chloroplast)-derived (10.3% with respect to the whole genome length) and non-coding sequences. In the non-coding regions, there are 0.33% tandem and 2.3% long repeats. Our transcriptomic data from eight tissues (root, seed, bud, fruit, green leaf, yellow leaf, female flower, and male flower) showed higher gene expression levels in male flower, root, bud, and female flower, as compared to four other tissues. We identified 120 potential SNPs among three date palm cultivars (Khalas, Fahal, and Sukry), and successfully found seven SNPs in the coding sequences. A phylogenetic analysis, based on 22 conserved genes of 15 representative plant mitochondria, showed that P. dactylifera positions at the root of all sequenced monocot mt genomes. In addition, consistent with previous discoveries, there are three co-transcribed gene clusters-18S-5S rRNA, rps3-rpl16 and nad3-rps12-in P. dactylifera, which are highly conserved among all known mitochondrial genomes of angiosperms.
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