Evidence map›Paper›PMID 22807455›Full record

ArticleProteomics2012

Comparative phosphoproteomic analysis of neonatal and adult murine brain.

Tapasree Goswami, Xue Li, Aidan M Smith, Eva M Luderowski, James J Vincent, John Rush, Bryan A Ballif

Abstract readComparative Study
In one paragraph

Article in Proteomics, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed.

  1. Article
  2. Posttranslational Regulation of Mammalian Sulfur Amino Acid Metabolism.International journal of molecular sciences · 2025
    Review
  3. Article
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  12. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Tapasree GoswamiDepartment of Cell Biology, Harvard Medical School, Boston, MA, USA.
Xue Li
Aidan M Smith
Eva M Luderowski
James J Vincent
John Rush
Bryan A Ballif

Funding

Vermont INBRE Administrative Supplement 2024 AWD 118P20GM103449 · NIGMS · UNIVERSITY OF VERMONT & ST AGRIC COLLEGE · PI Ying Wai Lam · 2012 to 2026
$58.4M
VOLATILE SIGNALING IN PHARBITIS NILP20RR016462 · NCRR · UNIVERSITY OF VERMONT &ST AGRIC COLLEGE · PI VAN HOUTEN, JUDITH L · 2001 to 2011
$31.1M
Proteomics Core for Neuroscience P20 RR16435P20RR016435 · NCRR · UNIVERSITY OF VERMONT &ST AGRIC COLLEGE · PI WHITE, SHERYL L · 2001 to 2010
$23.5M
Chromosome Metabolism and Cancer Training GrantT32CA009657 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI EISENMAN, ROBERT NEIL · 1991 to 2020
$7.6M
Center for Neuroscience ExcellenceP30GM103498 · NIGMS · UNIVERSITY OF VERMONT & ST AGRIC COLLEGE · PI PARSONS, RODNEY L · 2012 to 2015
$4.3M
TECHNOLOGY FOR AUTOMATED ANALYSIS OF PROTEOMESK22HG000041 · NHGRI · UNIVERSITY OF WASHINGTON · PI GYGI, STEVEN P · 2000 to 2004
$1.2M
INSTITUTIONAL TRAINING GRANT IN GENOMIC SCIENCET32HG000041 · NHGRI · BOSTON UNIVERSITY MEDICAL CAMPUS · PI SMITH, TEMPLE F · 1995 to 1999
–
NCI NIH HHS 5T32CA09657NCI NIH HHS T32 CA009657NCRR NIH HHS 2 P20 RR016435-06NCRR NIH HHS 5P20RR16462-11NCRR NIH HHS P20 RR016435NCRR NIH HHS P20 RR016462NHGRI NIH HHS HG00041NHGRI NIH HHS K22 HG000041NHGRI NIH HHS T32 HG000041NIGMS NIH HHS 8 P20 GM103449-11NIGMS NIH HHS P20 GM103449NIGMS NIH HHS P30 GM103498
6 · The paper itself

Abstract

Developmental processes are governed by diverse regulatory mechanisms including a suite of signaling pathways employing reversible phosphorylation. With the advent of large-scale phosphoproteomics, it is now possible to identify thousands of phosphorylation sites from tissues at distinct developmental stages. We describe here the identification of over 6000 nonredundant phosphorylation sites from neonatal murine brain. When compared to nearly three times the number of phosphorylation sites identified from 3-week-old murine brain, remarkably one-third of the neonatal sites were unique. This fraction only dropped to one-quarter when allowing the site to stray plus or minus 15 residues. This provides evidence for considerable change in the profiles of developmentally regulated phosphoproteomes. Using quantitative MS we characterized a novel phosphorylation site (Ser265) identified uniquely in the neonatal brain on doublecortin (Dcx), a protein essential for proper mammalian brain development. While the relative levels of Dcx and phospho-Ser265 Dcx between embryonic and neonatal brain were similar, their levels fell precipitously by postnatal day 21, as did phospho-Ser297, a site required for proper neuronal migration. Both sites lie near the microtubule-binding domain and may provide functionally similar regulation via different kinases.

Indexed as

Brain ChemistryAmino Acid SequenceAnimalsBrainDoublecortin Domain ProteinsDoublecortin-Like KinasesDoublecortin ProteinMass SpectrometryMiceMicrotubule-Associated ProteinsMolecular Sequence DataNeuropeptidesPhosphoproteinsPhosphorylationProtein Serine-Threonine KinasesProteomicsDclk1 protein, mouseDcx protein, mouseDoublecortin Domain ProteinsDoublecortin-Like KinasesDoublecortin ProteinMicrotubule-Associated ProteinsNeuropeptidesPhosphoproteinsProtein Serine-Threonine Kinases

Identifiers

PMID22807455
PMCPMC3816108

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.