Evidence map›Paper›PMID 23297349›Full record

ArticleMolecular & cellular proteomics : MCP2013

The nuclear protein ALY binds to and modulates the activity of transcription factor E2F2.

Nerea Osinalde, Miguel Olea, Jone Mitxelena, Kerman Aloria, Jose Antonio Rodriguez, Asier Fullaondo, Jesus M Arizmendi, Ana M Zubiaga

Abstract read
In one paragraph

Article in Molecular & cellular proteomics : MCP, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Golgi OncoproteinGenes · 2019
    Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Nerea OsinaldeDepartment of Biochemistry and Molecular Biology, University of the Basque Country, UPV/EHU, 48940 Leioa, Spain.
Miguel Olea
Jone Mitxelena
Kerman Aloria
Jose Antonio Rodriguez
Asier Fullaondo
Jesus M Arizmendi
Ana M Zubiaga

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

E2F transcription factors control the expression of genes involved in a variety of essential cellular processes and consequently their activity needs to be tightly regulated. Protein-protein interactions are thought to be key modulators of E2F activity. To gain insight into the mechanisms that regulate the activity of E2F2, we searched for novel proteins that associate with this transcription factor. We show that the nuclear protein ALY (THO complex 4), originally described as a transcriptional co-activator, associates with DNA-bound E2F2 and represses its transcriptional activity. The capacity of ALY to modulate gene expression was analyzed with expression microarrays by characterizing the transcriptome of E2F2 expressing HEK293T cells in which ALY was either overexpressed or silenced. We show that ALY influences the expression of more than 400 genes, including 98 genes bearing consensus E2F motifs. Thus, ALY emerges as a novel E2F2-interacting protein and a relevant modulator of E2F-responsive gene expression.

Indexed as

Amino Acid SequenceAnimalsE2F2 Transcription FactorGene Expression RegulationHEK293 CellsHumansMiceMolecular Sequence DataNuclear ProteinsPeptide MappingPromoter Regions, GeneticProtein BindingProtein Interaction Domains and MotifsProtein Interaction MappingRNA-Binding ProteinsTranscription FactorsALYREF protein, humanE2F2 protein, humanE2F2 Transcription FactorNuclear ProteinsRNA-Binding ProteinsTranscription Factors

Identifiers

PMID23297349
PMCPMC3650323

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.