Evidence map›Paper›PMID 23666240›Full record

SynthesisNature genetics2013

Identification of nine new susceptibility loci for testicular cancer, including variants near DAZL and PRDM14.

Elise Ruark, Sheila Seal, Heather McDonald, Feng Zhang, Anna Elliot, Kingwai Lau, Elizabeth Perdeaux, Elizabeth Rapley, Rosalind Eeles, Julian Peto and 11 more

Open access · greenAbstract readMeta-Analysis
In one paragraph

Synthesis in Nature genetics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 93 papers, 5 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
93citing papers in PubMed, 5 pooled it
20.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

93 citing papers in PubMed, 5 syntheses or guidelines pooled it, 156 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Pooled it
  4. Pooled it
  5. Pooled it
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Review

33 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

21 authors at 6 institutions in 1 country.

Elise RuarkDivision of Genetics and Epidemiology, Institute of Cancer Research, Sutton, UK.
Sheila Seal
Heather McDonald
Feng Zhang
Anna Elliot
Kingwai Lau
Elizabeth Perdeaux
Elizabeth Rapley
Rosalind Eeles
Julian Peto
Zsofia Kote-Jarai
Kenneth Muir
Jeremie Nsengimana
Janet Shipley
UK Testicular Cancer Collaboration (UKTCC)
D Timothy Bishop
Michael R Stratton
Douglas F Easton
Robert A Huddart
Nazneen Rahman
Clare Turnbull
Institute of Cancer Research · GBCancer Research UK · GBLondon School of Hygiene & Tropical Medicine · GBNational Health Service · GBUniversity of Warwick · GBWellcome Sanger Institute · GB

Funding

Cancer Research UK 10118Cancer Research UK 10589Cancer Research UK 11022Cancer Research UK 15007Cancer Research UK A10710Cancer Research UK C1287/A10710Cancer Research UK C5047/A7357Wellcome Trust
6 · The paper itself

Abstract

Testicular germ cell tumor (TGCT) is the most common cancer in young men and is notable for its high familial risks. So far, six loci associated with TGCT have been reported. From genome-wide association study (GWAS) analysis of 307,291 SNPs in 986 TGCT cases and 4,946 controls, we selected for follow-up 694 SNPs, which we genotyped in a further 1,064 TGCT cases and 10,082 controls from the UK. We identified SNPs at nine new loci (1q22, 1q24.1, 3p24.3, 4q24, 5q31.1, 8q13.3, 16q12.1, 17q22 and 21q22.3) showing association with TGCT (P < 5 × 10(-8)), which together account for an additional 4-6% of the familial risk of TGCT. The loci include genes plausibly related to TGCT development. PRDM14, at 8q13.3, is essential for early germ cell specification, and DAZL, at 3p24.3, is required for the regulation of germ cell development. Furthermore, PITX1, at 5q31.1, regulates TERT expression and is the third TGCT-associated locus implicated in telomerase regulation.

Indexed as

DNA-Binding ProteinsGene FrequencyGenetic Predisposition to DiseaseGenome-Wide Association StudyHumansLinkage DisequilibriumMaleNeoplasms, Germ Cell and EmbryonalPolymorphism, Single NucleotideRepressor ProteinsRisk FactorsRNA-Binding ProteinsTesticular NeoplasmsTranscription FactorsDAZL protein, humanDNA-Binding ProteinsPRDM14 protein, humanRepressor ProteinsRNA-Binding ProteinsTranscription Factors

Identifiers

PMID23666240
PMCPMC3680037
OpenAlexW2143540684

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.