Evidence map›Paper›PMID 23752188›Full record

ArticleOncogene2014

PDGFRA alterations in cancer: characterization of a gain-of-function V536E transmembrane mutant as well as loss-of-function and passenger mutations.

A I Velghe, S Van Cauwenberghe, A A Polyansky, D Chand, C P Montano-Almendras, S Charni, B Hallberg, A Essaghir, J-B Demoulin

Abstract read
PubMed Publisher
In one paragraph

Article in Oncogene, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
4.8field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 81 citations in OpenAlex.

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  7. Therapeutic advances of targeting receptor tyrosine kinases in cancer.Signal transduction and targeted therapy · 2024
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  10. NetMix2: A Principled Network Propagation Algorithm for Identifying Altered Subnetworks.Journal of computational biology : a journal of computational molecular cell biology · 2022
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  11. Article
  12. Review
  13. Article
  14. PDGF receptor mutations in human diseases.Cellular and molecular life sciences : CMLS · 2021
    Review
  15. Review
  16. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 4 countries.

A I Velghede Duve Institute, Université catholique de Louvain, Brussels, Belgium.
S Van Cauwenberghede Duve Institute, Université catholique de Louvain, Brussels, Belgium.
A A Polyansky1] Department of Structural and Computational Biology, Max F Perutz Laboratories, University of Vienna, Vienna, Austria [2] MM Shemyakin and Yu A Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, Moscow, Russia.
D ChandDepartment of Molecular Biology, Umeå University, Umeå, Sweden.
C P Montano-Almendrasde Duve Institute, Université catholique de Louvain, Brussels, Belgium.
S Charnide Duve Institute, Université catholique de Louvain, Brussels, Belgium.
B HallbergDepartment of Molecular Biology, Umeå University, Umeå, Sweden.
A Essaghirde Duve Institute, Université catholique de Louvain, Brussels, Belgium.
J-B Demoulinde Duve Institute, Université catholique de Louvain, Brussels, Belgium.ORCID 0000000280166689
de Duve Institute · BEUmeå University · SEUniversity of Vienna · AT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Activating mutations in the platelet-derived growth factor (PDGF) receptor alpha (PDGFRA) have been described in patients with gastrointestinal stromal tumors or myeloid malignancies associated with hypereosinophilia. These patients respond well to imatinib mesylate, raising the question as to whether patients with a PDGF receptor mutation in other tumor types should receive a tyrosine kinase inhibitor treatment. We characterized 10 novel somatic point mutations in PDGFRA that have been reported in isolated cases of glioblastoma, melanoma, acute myeloid leukemia, peripheral nerve sheath tumors and neuroendocrine carcinoma. The PDGFRA transmembrane domain mutation V536E stimulated Ba/F3 cell growth and signaling via ERK and STAT5 in the absence of ligand. This mutant, identified in glioblastoma, was strongly inhibited by imatinib. Modeling suggested that the mutation modulates the packing of the transmembrane domain helices in the receptor dimer. By contrast, two mutations in highly conserved residues affected the receptor traffic to the cell surface or kinase activity, thereby preventing the response to PDGF. The other mutations had no significant impact on the receptor activity. This functional analysis matched the predictions of SIFT and PolyPhen for only five mutations and these algorithms do not discriminate gain from loss of function. Finally, an E996K variant that had been identified in a melanoma cell line was not expressed in these cells. Altogether, several newly identified PDGFRA mutations do not activate the receptor and may therefore represent passenger mutations. Our results also underline the importance of characterizing novel kinase alterations in cancer patients.

Indexed as

Point MutationAmino Acid SequenceFlow CytometryGlycosylationHumansMolecular Sequence DataNeoplasmsProtein TransportReceptor, Platelet-Derived Growth Factor alphaSequence Homology, Amino AcidReceptor, Platelet-Derived Growth Factor alpha

Identifiers

PMID23752188
OpenAlexW2095279387

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.