Evidence map›Paper›PMID 23800941›Full record

ArticleClinical infectious diseases : an official publication of the Infectious Diseases Society of America2013

Identification of a major locus, TNF1, that controls BCG-triggered tumor necrosis factor production by leukocytes in an area hyperendemic for tuberculosis.

Aurelie Cobat, Eileen G Hoal, Caroline J Gallant, Leah Simkin, Gillian F Black, Kim Stanley, Jean-Philippe Jaïs, Ting-Heng Yu, Anne Boland-Auge, Ghislain Grange and 6 more

Open access · bronzeAbstract read
In one paragraph

Article in Clinical infectious diseases : an official publication of the Infectious Diseases Society of America, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed, 1 pooled it
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 1 synthesis or guideline pooled it, 35 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Review
  8. Article
  9. Genetics and evolution of tuberculosis pathogenesis: New perspectives and approaches.Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases · 2020
    Review
  10. Article
  11. Tuberculosis susceptibility and protection in children.The Lancet. Infectious diseases · 2019
    Review
  12. Review
  13. Review
  14. Review
  15. Genetic Resistance toFrontiers in immunology · 2018
    Review
  16. Human Genomics ofCurrent genetic medicine reports · 2017
    Article
  17. Observational
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 9 institutions in 4 countries.

Aurelie CobatMcGill International TB Centre and Departments of Human Genetics and Medicine, McGill University, Montreal, Quebec, Canada.
Eileen G Hoal
Caroline J Gallant
Leah Simkin
Gillian F Black
Kim Stanley
Jean-Philippe Jaïs
Ting-Heng Yu
Anne Boland-Auge
Ghislain Grange
Christophe Delacourt
Paul van Helden
Jean-Laurent Casanova
Laurent Abel
Alexandre Alcaïs
Erwin Schurr
Stellenbosch University · ZAInstitut Necker Enfants Malades · FRMcGill Genome Centre · CAMcGill University · CAUniversité Paris Cité · FRGenoscope · FRHôpital Necker-Enfants Malades · FRInstitut des Maladies Génétiques Imagine · FRMcGill University Health Centre · CA

Funding

Transforming Translational Science and Education to Benefit Human HealthUL1TR000043 · NCATS · ROCKEFELLER UNIVERSITY · PI COLLER, BARRY · 2012 to 2015
$26.8M
CIHR 111172European Research Council 268777NCATS NIH HHS 8UL1TR000043NCATS NIH HHS UL1 TR000043
6 · The paper itself

Abstract

backgroundTumor necrosis factor (TNF) is a key immune regulator of tuberculosis resistance, as exemplified by the highly increased risk of tuberculosis disease among individuals receiving TNF-blocker therapy.

methodsWe determined the extent of TNF production after stimulation with BCG or BCG plus interferon gamma (IFN-γ) using a whole blood assay in 392 children belonging to 135 nuclear families from an area hyperendemic for tuberculosis in South Africa. We conducted classical univariate and bivariate genome-wide linkage analysis of TNF production using the data from both stimulation protocols by means of an extension of the maximum-likelihood-binomial method for quantitative trait loci to multivariate analysis.

resultsStimulation of whole blood by either BCG or BCG plus IFN-γ resulted in a range of TNF release across subjects. Extent of TNF production following both stimulation protocols was highly correlated (r = 0.81). We failed to identify genetic linkage of TNF release when considering each stimulus separately. However, using a multivariate approach, we detected a major pleiotropic locus (P < 10(-5)) on chromosome region 11p15, termed TNF locus 1 (TNF1), that controlled TNF production after stimulation by both BCG alone and BCG plus IFN-γ.

conclusionsThe TNF1 locus was mapped in the vicinity of the TST1 locus, previously identified in the same family sample, that controls tuberculin skin test (TST) negativity per se, that is, T-cell-independent resistance to Mycobacterium tuberculosis infection. This suggested that there is a connection between TST negativity per se and TNF production.

Indexed as

AdultAnalysis of VarianceBCG VaccineChildChi-Square DistributionChromosomes, Human, Pair 11Endemic DiseasesFamilyGenetic PleiotropyHumansInterferon-gammaInterferon-gamma Release TestsLeukocytesLinkage DisequilibriumMycobacterium bovisPhenotypeBCG VaccineInterferon-gammaTumor Necrosis Factor-alphamultivariate linkage analysispleiotropic locusTNFtuberculosis

Identifiers

PMID23800941
PMCPMC3765013
OpenAlexW2113931442

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.