Evidence map›Paper›PMID 24122829›Full record

ArticleThe Plant cell2013

Identification of downstream components of ubiquitin-conjugating enzyme PHOSPHATE2 by quantitative membrane proteomics in Arabidopsis roots.

Teng-Kuei Huang, Chia-Li Han, Shu-I Lin, Yu-Ju Chen, Yi-Chuan Tsai, Yet-Ran Chen, June-Wei Chen, Wei-Yi Lin, Pei-Mien Chen, Tzu-Yin Liu and 3 more

Open access · greenAbstract read
In one paragraph

Article in The Plant cell, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 115 papers.

0numbers the graph read from it
0cells of the map it votes in
115citing papers in PubMed
24.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

115 citing papers in PubMed, 278 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Cargo Sorting Zones in Plant Trans-Golgi Network.Sub-cellular biochemistry · 2026
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  16. Exploring the phosphorus-starch content balance mechanisms in maize grains using GWAS population and transcriptome data.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024
    Article
  17. Review
  18. Review
  19. Review
  20. Article

55 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 1 country.

Teng-Kuei HuangAgricultural Biotechnology Research Center, Academia Sinica, Taipei 115, Taiwan.
Chia-Li Han
Shu-I Lin
Yu-Ju Chen
Yi-Chuan Tsai
Yet-Ran Chen
June-Wei Chen
Wei-Yi Lin
Pei-Mien Chen
Tzu-Yin Liu
Ying-Shin Chen
Ching-Mei Sun
Tzyy-Jen Chiou
Agricultural Biotechnology Research Center, Academia Sinica · TWNational Taiwan Ocean University · TWNational Chung Hsing University · TWInstitute of Chemistry, Academia Sinica · TW

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

MicroRNA399-mediated regulation of the ubiquitin-conjugating enzyme UBC24/phosphate2 (PHO2) is crucial for Pi acquisition and translocation in plants. Because of a potential role for PHO2 in protein degradation and its association with membranes, an iTRAQ (for isobaric tags for relative and absolute quantitation)- based quantitative membrane proteomic method was employed to search for components downstream of PHO2. A total of 7491 proteins were identified from Arabidopsis thaliana roots by mass spectrometry, 35.2% of which were predicted to contain at least one transmembrane helix. Among the quantifiable proteins, five were significantly differentially expressed between the wild type and pho2 mutant under two growth conditions. Using immunoblot analysis, we validated the upregulation of several members in phosphate transporter1 (PHT1) family and phosphate transporter traffic facilitator1 (PHF1) in pho2 and demonstrated that PHO2 mediates the degradation of PHT1 proteins. Genetic evidence that loss of PHF1 or PHT1;1 alleviated Pi toxicity in pho2 further suggests that they play roles as downstream components of PHO2. Moreover, we showed that PHO2 interacts with PHT1s in the postendoplasmic reticulum compartments and mediates the ubiquitination of endomembrane-localized PHT1;1. This study not only uncovers a mechanism by which PHO2 modulates Pi acquisition by regulating the abundance of PHT1s in the secretory pathway destined for plasma membranes, but also provides a database of the membrane proteome that will be widely applicable in root biology research.

Indexed as

ArabidopsisArabidopsis ProteinsCell MembraneEndoplasmic ReticulumGene Expression Regulation, PlantGolgi ApparatusPhosphatesPhosphate Transport ProteinsPlant RootsProtein Interaction MappingProteolysisProteomeUbiquitinationUbiquitin-Conjugating EnzymesArabidopsis ProteinsPhosphatesPhosphate Transport ProteinsPHT1;1 protein, ArabidopsisProteomeUBC24 protein, ArabidopsisUbiquitin-Conjugating Enzymes

Identifiers

PMID24122829
PMCPMC3877800
OpenAlexW2111145333

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.