Evidence map›Paper›PMID 24637361›Full record

ArticleBlood2014

Global transcriptome analyses of human and murine terminal erythroid differentiation.

Xiuli An, Vincent P Schulz, Jie Li, Kunlu Wu, Jing Liu, Fumin Xue, Jingping Hu, Narla Mohandas, Patrick G Gallagher

Abstract read
In one paragraph

Article in Blood, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 241 papers.

0numbers the graph read from it
0cells of the map it votes in
241citing papers in PubMed
15.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

241 citing papers in PubMed, 359 citations in OpenAlex.

  1. Article
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  6. Whole Blood Transcriptomic Analysis of Sickle Cell Trait.European journal of haematology · 2026
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181 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 3 countries.

Xiuli AnLaboratory of Membrane Biology and Red Cell Physiology Laboratory, New York Blood Center, New York, NY; College of Life Science, Zhengzhou University, Zhengzhou, Henan, China;
Vincent P SchulzDepartment of Pediatrics, Yale University School of Medicine, New Haven, CT;
Jie LiRed Cell Physiology Laboratory, New York Blood Center, New York, NY;
Kunlu WuRed Cell Physiology Laboratory, New York Blood Center, New York, NY; Molecular Biology Research Center, School of Biological Science and Technology and State Key Laboratory of Medical Genetics of China, Central South University, Changsha, Hunan, China; and.
Jing LiuRed Cell Physiology Laboratory, New York Blood Center, New York, NY; Molecular Biology Research Center, School of Biological Science and Technology and State Key Laboratory of Medical Genetics of China, Central South University, Changsha, Hunan, China; and.
Fumin XueLaboratory of Membrane Biology and.
Jingping HuLaboratory of Membrane Biology and.
Narla MohandasRed Cell Physiology Laboratory, New York Blood Center, New York, NY;
Patrick G GallagherDepartment of Pediatrics, Yale University School of Medicine, New Haven, CT; Departments of Pathology and Genetics, Yale University School of Medicine, New Haven, CT.
New York Blood Center · USLaboratoire de Biologie Physico-Chimique des Protéines Membranaires · FRYale University · USCentral South University · CN

Funding

YEAST MEMBRANE CYTOSKELETONP01DK032094 · NIDDK · UNIVERSITY OF CALIFORNIA SAN FRANCISCO · PI NARLA, MOHANDAS · 1987 to 2021
$26.7M
RED CELL DEFORMABILITY IN VITRO AND SURVIVAL IN VIVOR37DK026263 · NIDDK · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI NARLA, MOHANDAS · 1995 to 2017
$4.5M
MOLECULAR BIOLOGY OF HUMAN ERYTHROCYTE ALPHA-SPECTRINR01HL065448 · NHLBI · YALE UNIVERSITY · PI GALLAGHER, PATRICK G · 2000 to 2013
$4.4M
Molecular Biology of Erythrocyte AnkyrinR01DK062039 · NIDDK · YALE UNIVERSITY · PI GALLAGHER, PATRICK G · 2002 to 2010
$3.3M
RED CELL DEFORMABILITY IN VITRO AND SURVIVAL IN VIVOR01DK026263 · NIDDK · UNIVERSITY OF CALIFORNIA SAN FRANCISCO · PI NARLA, MOHANDAS · 1986 to 2007
$1.6M
NHLBI NIH HHS HL65448NHLBI NIH HHS R01 HL065448NIDDK NIH HHS DK26263NIDDK NIH HHS DK32094NIDDK NIH HHS DK62039NIDDK NIH HHS P01 DK032094NIDDK NIH HHS R01 DK026263NIDDK NIH HHS R01 DK062039NIDDK NIH HHS R37 DK026263
6 · The paper itself

Abstract

We recently developed fluorescence-activated cell sorting (FACS)-based methods to purify morphologically and functionally discrete populations of cells, each representing specific stages of terminal erythroid differentiation. We used these techniques to obtain pure populations of both human and murine erythroblasts at distinct developmental stages. RNA was prepared from these cells and subjected to RNA sequencing analyses, creating unbiased, stage-specific transcriptomes. Tight clustering of transcriptomes from differing stages, even between biologically different replicates, validated the utility of the FACS-based assays. Bioinformatic analyses revealed that there were marked differences between differentiation stages, with both shared and dissimilar gene expression profiles defining each stage within transcriptional space. There were vast temporal changes in gene expression across the differentiation stages, with each stage exhibiting unique transcriptomes. Clustering and network analyses revealed that varying stage-specific patterns of expression observed across differentiation were enriched for genes of differing function. Numerous differences were present between human and murine transcriptomes, with significant variation in the global patterns of gene expression. These data provide a significant resource for studies of normal and perturbed erythropoiesis, allowing a deeper understanding of mechanisms of erythroid development in various inherited and acquired erythroid disorders.

Indexed as

TranscriptomeAnimalsCell DifferentiationCluster AnalysisErythroid Precursor CellsErythropoiesisGene Expression ProfilingGene Expression RegulationHumansImmunophenotypingMiceSequence Analysis, RNATranscription FactorsTranscription Factors

Identifiers

PMID24637361
PMCPMC4041167
OpenAlexW2044354693

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.