Evidence map›Paper›PMID 24690670›Full record

ArticlePloS one2014

Transcriptional regulation of YWHAZ, the gene encoding 14-3-3ζ.

Andrea Kasinski, Xueyuan Dong, Fadlo R Khuri, Jeremy Boss, Haian Fu

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.0field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 18 citations in OpenAlex.

  1. Review
  2. Pediatric fibromyxoid brachial plexus tumor with YWHAZ::PLAG1 gene fusion: a case report.Child's nervous system : ChNS : official journal of the International Society for Pediatric Neurosurgery · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Andrea KasinskiProgram in Genetics and Molecular Biology, Emory University, Atlanta, Georgia, United States of America; Department of Pharmacology, Emory University, Atlanta, Georgia, United States of America.
Xueyuan DongDepartment of Pharmacology, Emory University, Atlanta, Georgia, United States of America.
Fadlo R KhuriDepartment of Hematology and Medical Oncology, Emory University, Atlanta, Georgia, United States of America.
Jeremy BossDepartment of Microbiology and Immunology, Emory University, Atlanta, Georgia, United States of America.
Haian FuDepartment of Pharmacology, Emory University, Atlanta, Georgia, United States of America.
Emory University · US

Funding

Targeting Microtubules and HDAC6 in NSCLCP01CA116676 · NCI · EMORY UNIVERSITY · PI KHURI, FADLO RAJA · 2006 to 2012
$8.0M
Regulation of MHC Class II GenesR01GM047310 · NIGMS · EMORY UNIVERSITY · PI BOSS, JEREMY M. · 1993 to 2015
$4.6M
NCI NIH HHS P01 CA116676NIGMS NIH HHS R01 GM047310NIGMS NIH HHS R01 GM47310
6 · The paper itself

Abstract

Aberrant expression of oncogenic 14-3-3 proteins is correlated with poor survival of cancer patients. While the underlying mechanism of the abnormal expression in tumors remains elusive for the six oncogenic 14-3-3 isoforms; the potential involvement of a transcriptional component has been suggested. Unfortunately, little experimental data has been reported to support this hypothesis. In this study we describe the genetic structure of YWHAZ, the gene encoding 14-3-3ζ, including the identification of previously unreported transcript variants. In total, five transcript variants were revealed and their expressions confirmed in a panel of cell lines. Expressed sequence tag (EST) database mining and in vitro rapid-amplification of cDNA ends (RACE) confirmed that one variant, 1c, represents >80% of the expressed transcripts, which is also the most efficiently translated. An analysis of the proximal promoter of this variant revealed a functional Cyclic-AMP Response Element (CRE). Factors that bound to the CRE element were recognized through fractionation and subsequent EMSAs. This analysis identified CREB and ATF-1 as the trans-interacting factors. Cell-based assays confirm that ATF-1, and to a lesser extent CREB, bind the endogenous YWHAZ promoter especially under TNF-α stimulating conditions. In support of a role of ATF-1 in the regulation of YWHAZ, silencing of ATF-1 resulted in a marked reduction in two of the five YWHAZ transcripts. These data suggest a novel mechanism for the transcriptional regulation of a major pro-survival gene, YWHAZ, by ATF-1.

Indexed as

Gene Expression RegulationTranscription, Genetic14-3-3 Proteins5' Untranslated RegionsActivating Transcription Factor 1Alternative SplicingBase SequenceCell LineCyclic AMP Response Element-Binding ProteinExonsHumansMolecular Sequence DataNuclear ProteinsPromoter Regions, GeneticProtein BindingProtein Biosynthesis14-3-3 Proteins5' Untranslated RegionsActivating Transcription Factor 1Cyclic AMP Response Element-Binding ProteinNuclear ProteinsRNA IsoformsRNA, MessengerTumor Necrosis Factor-alpha

Identifiers

PMID24690670
PMCPMC3972145
OpenAlexW2165133061

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.