Evidence map›Paper›PMID 24725948›Full record

ArticleVirology2014

Host restriction of murine gammaherpesvirus 68 replication by human APOBEC3 cytidine deaminases but not murine APOBEC3.

Nana Minkah, Kevin Chavez, Parth Shah, Thomas Maccarthy, Hui Chen, Nathaniel Landau, Laurie T Krug

Abstract read
In one paragraph

Article in Virology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 22 citations in OpenAlex.

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  18. Mouse knockout models for HIV-1 restriction factors.Cellular and molecular life sciences : CMLS · 2014
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Nana MinkahDepartment of Molecular Genetics and Microbiology, Stony Brook University, Stony Brook, NY 11794, USA.
Kevin ChavezDepartment of Molecular Genetics and Microbiology, Stony Brook University, Stony Brook, NY 11794, USA.
Parth ShahDepartment of Applied Mathematics and Statistics, Stony Brook University, Stony Brook, NY 11794, USA.
Thomas MaccarthyDepartment of Applied Mathematics and Statistics, Stony Brook University, Stony Brook, NY 11794, USA.
Hui ChenDepartment of Microbiology, NYU Langone Medical Center, New York, NY 10016, USA; Infectious Disease Laboratory, Salk Institute, La Jolla, CA 92037, USA.
Nathaniel LandauDepartment of Microbiology, NYU Langone Medical Center, New York, NY 10016, USA; Infectious Disease Laboratory, Salk Institute, La Jolla, CA 92037, USA.
Laurie T KrugDepartment of Molecular Genetics and Microbiology, Stony Brook University, Stony Brook, NY 11794, USA. Electronic address: laurie.krug@stonybrook.edu.
Stony Brook University · USSalk Institute for Biological Studies · US

Funding

APOBEC3G/CEM15 Inhibition of Lentivirus ReplicationR01AI058864 · NIAID · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI LANDAU, NATHANIEL R. · 2004 to 2015
$4.5M
MINORITY ACCESS TO RESEARCH CAREERST34GM008655 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI MOLONEY, DANIEL J · 1997 to 2013
$2.3M
Mechanisms of APOBEC3A InhibitionR01AI074967 · NIAID · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI WEITZMAN, MATTHEW D. · 2009 to 2013
$2.3M
Function of gammaherpesvirus ORF75 tegument proteinsR21AI097875 · NIAID · STATE UNIVERSITY NEW YORK STONY BROOK · PI KRUG, LAURIE T · 2012 to 2013
$427k
NIAID NIH HHS AI058864NIAID NIH HHS AI074967NIAID NIH HHS AI097875NIAID NIH HHS R01 AI058864NIAID NIH HHS R01 AI074967NIAID NIH HHS R21 AI097875NIGMS NIH HHS 5T34GM008655NIGMS NIH HHS T34 GM008655
6 · The paper itself

Abstract

Humans encode seven APOBEC3 (A3A-A3H) cytidine deaminase proteins that differ in their expression profiles, preferred nucleotide recognition sequence and capacity for restriction of RNA and DNA viruses. We identified APOBEC3 hotspots in numerous herpesvirus genomes. To determine the impact of host APOBEC3 on herpesvirus biology in vivo, we examined whether murine APOBEC3 (mA3) restricts murine gammaherpesvirus 68 (MHV68). Viral replication was impaired by several human APOBEC3 proteins, but not mA3, upon transfection of the viral genome. The restriction was abrogated upon mutation of the A3A and A3B active sites. Interestingly, virus restriction by A3A, A3B, A3C, and A3DE was lost if the infectious DNA was delivered by the virion. MHV68 pathogenesis, including lung replication and splenic latency, was not altered in mice lacking mA3. We infer that mA3 does not restrict wild type MHV68 and restriction by human A3s may be limited in the herpesvirus replication process.

Indexed as

Viral TropismAnimalsAPOBEC DeaminasesCell LineCytidine DeaminaseCytosine DeaminaseHumansMiceMice, KnockoutRhadinovirusApobec3 protein, mouseAPOBEC3 proteins, humanAPOBEC DeaminasesCytidine DeaminaseCytosine DeaminaseAPOBEC3Cytidine deaminaseHerpesvirusHost restrictionLatencyMurine gammaherpesvirusPathogenesisReplication

Identifiers

PMID24725948
PMCPMC4036618
OpenAlexW2074611509

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.