Evidence map›Paper›PMID 25285165›Full record

ArticleTheranostics2014

Glycoproteomic study reveals altered plasma proteins associated with HIV elite suppressors.

Weiming Yang, Oliver Laeyendecker, Sarah K Wendel, Bai Zhang, Shisheng Sun, Jian-Ying Zhou, Minghui Ao, Richard D Moore, J Brooks Jackson, Hui Zhang

Open access · goldAbstract read
In one paragraph

Article in Theranostics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 17 citations in OpenAlex.

  1. LRG1: an emerging player in disease pathogenesis.Journal of biomedical science · 2022
    Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Clinical proteomics · 2019
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Weiming Yang1. Department of Pathology, , Johns Hopkins University School of Medicine, Baltimore, Maryland, USA;
Oliver Laeyendecker2. Department of Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA; ; 3. Laboratory of Immunoregulation, Division of Intramural Research, National Institute of Allergy and Infectious Diseases, NIH, Baltimore, Maryland, USA.
Sarah K Wendel3. Laboratory of Immunoregulation, Division of Intramural Research, National Institute of Allergy and Infectious Diseases, NIH, Baltimore, Maryland, USA.
Bai Zhang1. Department of Pathology, , Johns Hopkins University School of Medicine, Baltimore, Maryland, USA;
Shisheng Sun1. Department of Pathology, , Johns Hopkins University School of Medicine, Baltimore, Maryland, USA;
Jian-Ying Zhou1. Department of Pathology, , Johns Hopkins University School of Medicine, Baltimore, Maryland, USA;
Minghui Ao1. Department of Pathology, , Johns Hopkins University School of Medicine, Baltimore, Maryland, USA;
Richard D Moore2. Department of Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA;
J Brooks Jackson1. Department of Pathology, , Johns Hopkins University School of Medicine, Baltimore, Maryland, USA;
Hui Zhang1. Department of Pathology, , Johns Hopkins University School of Medicine, Baltimore, Maryland, USA;
Johns Hopkins University · USJohns Hopkins Medicine · USNational Institutes of Health · US

Funding

LC: HIV Prevention Trials Network - Laboratory Support for the SARS-CoV-2 Seroprevalence Study (CoVPN 5002)UM1AI068613 · NIAID · JOHNS HOPKINS UNIVERSITY · PI SUSAN H ESHLEMAN, Mark A Marzinke · 2011 to 2026
$100.2M
Shared Resource CoresP01HL107153 · NHLBI · JOHNS HOPKINS UNIVERSITY · PI ZHANG, HUI · 2011 to 2017
$16.8M
International Studies of the Acquired Immune Deficiency Syndrome (AIDS)ZIAAI000361 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI REDD, ANDREW · 2009 to 2025
$15.8M
Johns Hopkins HIV Clinical CohortU01DA036935 · NIDA · JOHNS HOPKINS UNIVERSITY · PI MOORE, RICHARD DOUGLAS · 2014 to 2024
$14.9M
Proteome Characterization Center: A Genoproteomics Pipeline for Cance ResearchU24CA160036 · NCI · JOHNS HOPKINS UNIVERSITY · PI CHAN, DANIEL WANYUI, ZHANG, HUI · 2011 to 2016
$10.7M
Clinical and Analytical Validation of Cancer BiomarkersU24CA115102 · NCI · JOHNS HOPKINS UNIVERSITY · PI CHAN, DANIEL WANYUI · 2005 to 2021
$7.4M
Glycoprotein biomarkers for the early detection of aggressive prostate cancerU01CA152813 · NCI · JOHNS HOPKINS UNIVERSITY · PI ZHANG, HUI · 2010 to 2021
$6.2M
Johns Hopkins University-Guangxi, China Clinical Trials UnitU01AI069482 · NIAID · JOHNS HOPKINS UNIVERSITY · PI JACKSON, JAY B · 2007 to 2011
$4.7M
Probing the Connections between Monosaccharide Analogs, Sialic Acid Metabolism, aR01CA112314 · NCI · JOHNS HOPKINS UNIVERSITY · PI YAREMA, KEVIN J · 2005 to 2022
$4.5M
NCI NIH HHS R01 CA112314NCI NIH HHS R01CA112314NCI NIH HHS U01 CA152813NCI NIH HHS U24 CA115102NCI NIH HHS U24CA115102NCI NIH HHS U24 CA160036NCI NIH HHS U24CA160036NHLBI NIH HHS N01-HV-00240NHLBI NIH HHS P01 HL107153NHLBI NIH HHS P01HL107153NIAID NIH HHS 1U01 AI69482-01NIAID NIH HHS U01 AI069482NIAID NIH HHS UM1 AI068613NIDA NIH HHS U01 DA036935
6 · The paper itself

Abstract

HIV elite suppressors (ES) or controllers are individuals achieving control of viremia by their natural immunological mechanisms without highly active antiretroviral therapy (HAART). Study of the mechanisms responsible for the immunological suppression of viremia in ES may lead to the detection of individuals with ES and the effective control of HIV infection. We hypothesize that plasma glycoproteins play essential roles in the immune system of ES since plasma proteins are critical and highly relevant in anti-viral immunity and most plasma proteins are glycoproteins. To examine glycoproteins associated with ES, plasma samples from ES individuals (n=20), and from individuals on HAART (n=20), with AIDS (n=20), and no HIV infection (n=10) were analyzed by quantitative glycoproteomics. We found that a number of glycoproteins changed between ES versus HAART, AIDS and HIV- individuals. In sharp contrast, the level of plasma glycoproteins in the HAART cohort showed fewer changes compared with AIDS and HIV- individuals. These results showed that although both ES and HAART effectively suppress viremia, ES appeared to profoundly affect immunologically relevant glycoproteins in plasma as consequence of or support for anti-viral immunity. Bioinformatic analysis revealed that altered proteins in ES plasma were mainly associated with inflammation. This analysis suggests that overlapping, while distinguishable, glycoprotein profiles for inflammation and immune activation appeared to be present between ES and non-ES (HAART+AIDS) cohorts, indicating different triggers for inflammation and immune activation between natural and treatment-related viral suppression.

Indexed as

GlycomicsAdultAnti-HIV AgentsAntiretroviral Therapy, Highly ActiveBlood ProteinsCohort StudiesFemaleGlycoproteinsHIV-1HIV InfectionsHumansMaleMass SpectrometryAnti-HIV AgentsBlood ProteinsGlycoproteinsAIDSelite suppressorglycoproteinglycoproteomicsHAARTHIVimmune activationinflammation

Identifiers

PMID25285165
PMCPMC4183994
OpenAlexW2106699204

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.