Evidence map›Paper›PMID 25340522›Full record

ArticlePLoS genetics2014

Germline mutations in MAP3K6 are associated with familial gastric cancer.

Daniel Gaston, Samantha Hansford, Carla Oliveira, Mathew Nightingale, Hugo Pinheiro, Christine Macgillivray, Pardeep Kaurah, Andrea L Rideout, Patricia Steele, Gabriela Soares and 16 more

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
3.8field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 68 citations in OpenAlex.

  1. Observational
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Hereditary Diffuse Gastric Cancer: A 2022 Update.Journal of personalized medicine · 2022
    Review
  8. Article
  9. Neurology. Genetics · 2021
    Article
  10. Article
  11. Article
  12. Diffuse gastric cancer: histologic, molecular, and genetic basis of disease.Translational gastroenterology and hepatology · 2020
    Review
  13. Article
  14. Frequency of CDH1 germline variants and contribution of dietary habits in early age onset gastric cancer patients in Brazil.Gastric cancer : official journal of the International Gastric Cancer Association and the Japanese Gastric Cancer Association · 2019
    Article
  15. Review
  16. Clinical spectrum and pleiotropic nature ofJournal of medical genetics · 2019
    Review
  17. Role of germline aberrations affectingJournal of medical genetics · 2018
    Article
  18. Review
  19. Germline mutations in hereditary diffuse gastric cancer.Chinese journal of cancer research = Chung-kuo yen cheng yen chiu · 2018
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

26 authors at 6 institutions in 3 countries.

Daniel GastonDepartment of Pathology, Dalhousie University, Halifax, Nova Scotia, Canada.
Samantha HansfordDepartment of Pathology and Laboratory Medicine, University of British Columbia, Vancouver, British Columbia, Canada.
Carla OliveiraExpression Regulation in Cancer Group, IPATIMUP, Institute of Molecular Pathology and Immunology of the University of Porto & Medical Faculty of the University of Porto, Porto, Portugal.
Mathew NightingaleDepartment of Pathology, Dalhousie University, Halifax, Nova Scotia, Canada.
Hugo PinheiroExpression Regulation in Cancer Group, IPATIMUP, Institute of Molecular Pathology and Immunology of the University of Porto & Medical Faculty of the University of Porto, Porto, Portugal.
Christine MacgillivrayDepartment of Ophthalmology and Visual Sciences, Dalhousie University, Halifax, Nova Scotia, Canada.
Pardeep KaurahDepartment of Pathology and Laboratory Medicine, University of British Columbia, Vancouver, British Columbia, Canada.
Andrea L RideoutMedical Genetics, IWK Health Centre, Halifax, Nova Scotia, Canada.
Patricia SteeleMedical Genetics, IWK Health Centre, Halifax, Nova Scotia, Canada.
Gabriela SoaresCenter of Medical Genetics Jacinto de Magalhães, Porto Hospital Center, Porto, Portugal.
Weei-Yuarn HuangDivision of Anatomical Pathology, Department of Pathology, Queen Elizabeth II Health Science Center and Dalhousie University, Halifax, Nova Scotia, Canada.
Scott WhitehouseDepartment of Pathology, Dalhousie University, Halifax, Nova Scotia, Canada.
Sarah BlowersQueen's Family Health Team, Kingston, Ontario, Canada.
Marissa A LeBlancDepartment of Pathology, Dalhousie University, Halifax, Nova Scotia, Canada.
Haiyan JiangDepartment of Biostatistics, Princess Margaret Cancer Centre, Toronto, Ontario, Canada.
Wenda GreerDepartment of Pathology, Dalhousie University, Halifax, Nova Scotia, Canada.
Mark E SamuelsDepartment of Pathology, Dalhousie University, Halifax, Nova Scotia, Canada; Centre de Recherche du CHU Ste-Justine and Department of Medicine, University of Montreal, Montreal, Quebec, Canada.
Andrew OrrDepartment of Pathology, Dalhousie University, Halifax, Nova Scotia, Canada; Department of Ophthalmology and Visual Sciences, Dalhousie University, Halifax, Nova Scotia, Canada.
Conrad V FernandezDepartment of Pediatrics, Dalhousie University, Halifax, Nova Scotia, Canada.
Jacek MajewskiDepartment of Human Genetics, McGill University, Montreal, Québec, Canada.
Mark LudmanMedical Genetics, IWK Health Centre, Halifax, Nova Scotia, Canada; Oncogenetics Service, Institute of Medical Genetics, Meir Medical Center, Kfar Saba, Israel.
Sarah DyackMedical Genetics, IWK Health Centre, Halifax, Nova Scotia, Canada; Department of Pediatrics, Dalhousie University, Halifax, Nova Scotia, Canada.
Lynette S PenneyMedical Genetics, IWK Health Centre, Halifax, Nova Scotia, Canada; Department of Pediatrics, Dalhousie University, Halifax, Nova Scotia, Canada.
Christopher R McMasterDepartment of Pharmacology, Dalhousie University, Halifax, Nova Scotia, Canada.
David HuntsmanDepartment of Pathology and Laboratory Medicine, University of British Columbia, Vancouver, British Columbia, Canada.
Karen BedardDepartment of Pathology, Dalhousie University, Halifax, Nova Scotia, Canada.
Dalhousie University · CAIzaak Walton Killam Health Centre · CAUniversity of British Columbia · CAUniversidade do Porto · PTMcGill University · CAPrincess Margaret Cancer Centre · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Gastric cancer is among the leading causes of cancer-related deaths worldwide. While heritable forms of gastric cancer are relatively rare, identifying the genes responsible for such cases can inform diagnosis and treatment for both hereditary and sporadic cases of gastric cancer. Mutations in the E-cadherin gene, CDH1, account for 40% of the most common form of familial gastric cancer (FGC), hereditary diffuse gastric cancer (HDGC). The genes responsible for the remaining forms of FGC are currently unknown. Here we examined a large family from Maritime Canada with FGC without CDH1 mutations, and identified a germline coding variant (p.P946L) in mitogen-activated protein kinase kinase kinase 6 (MAP3K6). Based on conservation, predicted pathogenicity and a known role of the gene in cancer predisposition, MAP3K6 was considered a strong candidate and was investigated further. Screening of an additional 115 unrelated individuals with non-CDH1 FGC identified the p.P946L MAP3K6 variant, as well as four additional coding variants in MAP3K6 (p.F849Sfs*142, p.P958T, p.D200Y and p.V207G). A somatic second-hit variant (p.H506Y) was present in DNA obtained from one of the tumor specimens, and evidence of DNA hypermethylation within the MAP3K6 gene was observed in DNA from the tumor of another affected individual. These findings, together with previous evidence from mouse models that MAP3K6 acts as a tumor suppressor, and studies showing the presence of somatic mutations in MAP3K6 in non-hereditary gastric cancers and gastric cancer cell lines, point towards MAP3K6 variants as a predisposing factor for FGC.

Indexed as

Genetic Predisposition to DiseaseAntigens, CDCadherinsDNA Mutational AnalysisFemaleGenetic LinkageGenotypeGerm-Line MutationHumansMaleMAP Kinase Kinase KinasesPedigreePolymorphism, Single NucleotideStomach NeoplasmsAntigens, CDCadherinsCDH1 protein, humanMAP kinase kinase kinase 6MAP Kinase Kinase Kinases

Identifiers

PMID25340522
PMCPMC4207611
OpenAlexW1983590366

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.