Evidence map›Paper›PMID 25407492›Full record

ArticleMarine biotechnology (New York, N.Y.)2015

Preferential expression of a bromoperoxidase in sporophytes of a red alga, Pyropia yezoensis.

Ryuya Matsuda, Rengin Ozgur, Yuya Higashi, Katsuaki Takechi, Hiroyoshi Takano, Susumu Takio

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Article in Marine biotechnology (New York, N.Y.), 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

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4 · The record

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5 · Who and what money

Authors and funding

6 authors.

Ryuya MatsudaGraduate School of Science and Technology, Kumamoto University, Kurokami, Kumamoto, 860-8555, Japan.
Rengin Ozgur
Yuya Higashi
Katsuaki Takechi
Hiroyoshi Takano
Susumu Takio

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A 2,158 bp cDNA (PyBPO1) encoding a bromoperoxidase (BPO) of 625 amino acids was isolated from Pyropia yezoensis. Phylogenetic analysis using amino acid sequences of BPOs suggested that P. yezoensis and cyanobacteria were grouped in the same clade and separated from brown algae. Genomic Southern blot analysis suggested that PyBPO1 existed as a single copy per haploid genome. RT-PCR revealed that PyBPO1 was actively expressed in filamentous sporophytes but repressed in leafy gametophytes under normal growth conditions. High expression levels of PyBPO1 in sporophytes were observed when sporophytes were grown under gametophyte conditions, suggesting that preferential expression of PyBPO1 occurs during the sporophyte phase. BPO activity of cell-free extracts from sporophytes and gametophytes was examined by activity staining on native PAGE gel using o-dianisidine. One activity band was detected in sporophyte sample, but not in gametophyte sample. In addition, we found that bromide and iodide were effective substrate, but chloride was not. BPO activity was observed-likely in chloroplasts-when sporophyte cells were incubated with o-dianisidine and hydrogen peroxide. Cellular BPO staining showed the same halogen preference identified by in-gel BPO staining. Based on GS-MS analysis, bromoform was detected in medium containing sporophytes. Bromoform was not detected under dark culture conditions but was detected in the culture exposed to low light intensity (5 μmol m(-2) s(-1)) and increased under a moderate light intensity (30 μmol m(-2) s(-1)).

Indexed as

PhylogenyAmino Acid SequenceBase SequenceBlotting, SouthernCluster AnalysisDNA, ComplementaryDNA PrimersElectrophoresis, Polyacrylamide GelGas Chromatography-Mass SpectrometryGene Expression Regulation, DevelopmentalLife Cycle StagesMolecular Sequence DataPeroxidasesReverse Transcriptase Polymerase Chain ReactionRhodophytaSequence Analysis, DNAbromide peroxidasebromoformDNA, ComplementaryDNA PrimersPeroxidasesTrihalomethanes

Identifiers

What Socratic holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.