Evidence map›Paper›PMID 25489233›Full record

ArticleMolecular vision2014

A profile of transcriptomic changes in the rd10 mouse model of retinitis pigmentosa.

Philip J Uren, Justine T Lee, M Mehdi Doroudchi, Andrew D Smith, Alan Horsager

Open access · greenAbstract read
In one paragraph

Article in Molecular vision, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
1.3field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 38 citations in OpenAlex.

  1. Article
  2. Article
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  4. Novel photoreceptor-specific promoters for gene therapy in mid- to late-stage retinal degeneration.Molecular therapy : the journal of the American Society of Gene Therapy · 2025
    Article
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  7. Molecular therapy. Nucleic acids · 2023
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  11. Review
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  13. The Chemokine Receptors Ccr5 and Cxcr6 Enhance Migration of Mesenchymal Stem Cells into the Degenerating Retina.Molecular therapy : the journal of the American Society of Gene Therapy · 2021
    Article
  14. Article
  15. Review
  16. Article
  17. Rescuing cones and daylight vision in retinitis pigmentosa mice.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2019
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Philip J UrenMolecular and Computational Biology, University of Southern California, Los Angeles, CA.
Justine T LeeInstitute for Genetic Medicine, Keck School of Medicine, University of Southern California, Los Angeles, CA.
M Mehdi DoroudchiEos Neuroscience, Inc., Los Angeles, CA.
Andrew D SmithMolecular and Computational Biology, University of Southern California, Los Angeles, CA.
Alan HorsagerInstitute for Genetic Medicine, Keck School of Medicine, University of Southern California, Los Angeles, CA.
University of Southern California · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

purposeRetinitis pigmentosa (RP) is a photoreceptor disease that affects approximately 100,000 people in the United States. Treatment options are limited, and the prognosis for most patients is progressive vision loss. Unfortunately, understanding of the molecular underpinnings of RP initiation and progression is still limited. However, the development of animal models of RP, coupled with high-throughput sequencing, has provided an opportunity to study the underlying cellular and molecular changes in this disease.

methodsUsing RNA-Seq, we present the first retinal transcriptome analysis of the rd10 murine model of retinal degeneration.

resultsOur data confirm the loss of rod-specific transcripts and the increased relative expression of Müller-specific transcripts, emphasizing the important role of reactive gliosis and innate immune activation in RP. Moreover, we report substantial changes in relative isoform usage among neuronal differentiation and morphogenesis genes, including a marked shift to shorter transcripts.

conclusionsOur analyses implicate remodeling of the inner retina and possible Müller cell dedifferentiation.

Indexed as

TranscriptomeAnimalsCell DedifferentiationDisease Models, AnimalEpendymoglial CellsEye ProteinsGene Expression ProfilingGene Expression RegulationImmunity, InnateMetabolic Networks and PathwaysMiceMice, Inbred C57BLMice, TransgenicMolecular Sequence AnnotationRetinal Rod Photoreceptor CellsRetinitis PigmentosaEye ProteinsRNA, Messenger

Identifiers

PMID25489233
PMCPMC4235044
OpenAlexW130495173

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.