Evidence map›Paper›PMID 25498789›Full record

ReviewTrends in genetics : TIG2015

Integrating phenotypic small-molecule profiling and human genetics: the next phase in drug discovery.

Cory M Johannessen, Paul A Clemons, Bridget K Wagner

Abstract readReview
In one paragraph

Review in Trends in genetics : TIG, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. High content analysis in amyotrophic lateral sclerosis.Molecular and cellular neurosciences · 2017
    Review
  6. Review
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Cory M JohannessenCancer Program, Broad Institute of Harvard and MIT, Cambridge, MA, USA.
Paul A ClemonsCenter for the Science of Therapeutics, Broad Institute of Harvard and MIT, Cambridge, MA, USA.
Bridget K WagnerCenter for the Science of Therapeutics, Broad Institute of Harvard and MIT, Cambridge, MA, USA. Electronic address: bwagner@broadinstitute.org.

Funding

Targeting Causal Cancer Genes with Small MoleculesRC2CA148399 · NCI · BROAD INSTITUTE, INC. · PI SCHREIBER, STUART L · 2009 to 2012
$5.2M
NCI NIH HHS RC2 CA148399NCI NIH HHS RC2-CA148399
6 · The paper itself

Abstract

Over the past decade, tremendous progress in high-throughput small molecule-screening methods has facilitated the rapid expansion of phenotype-based data. Parallel advances in genomic characterization methods have complemented these efforts by providing a growing list of annotated cell line features. Together, these developments have paved the way for feature-based identification of novel, exploitable cellular dependencies, subsequently expanding our therapeutic toolkit in cancer and other diseases. Here, we provide an overview of the evolution of phenotypic small-molecule profiling and discuss the most significant and recent profiling and analytical efforts, their impact on the field, and their clinical ramifications. We additionally provide a perspective for future developments in phenotypic profiling efforts guided by genomic science.

Indexed as

Drug DiscoveryGenetics, MedicalDrug ResistanceGenome, HumanHumansPhenotypeSmall Molecule LibrariesSmall Molecule Librariescell line profilinggenotype–phenotypesmall molecule

Identifiers

PMID25498789
PMCPMC4281276

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.