Evidence map›Paper›PMID 25609461›Full record

ArticleBMC genomics2015

Cetaceans evolution: insights from the genome sequences of common minke whales.

Jung Youn Park, Yong-Rock An, Naohisa Kanda, Chul-Min An, Hye Suck An, Jung-Ha Kang, Eun Mi Kim, Du-Hae An, Hojin Jung, Myunghee Joung and 17 more

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
4.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 39 citations in OpenAlex.

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  8. A new archaic baleen whaleRoyal Society open science · 2018
    Article
  9. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

27 authors at 7 institutions in 3 countries.

Jung Youn ParkBiotechnology Research Division, National Fisheries Research & Development Institute, Gijang gun, Busan, 619-705, Republic of Korea. genome@korea.kr.
Yong-Rock AnCetacean Research Institute, National Fisheries Research & Development Institute, Nam-gu, Ulsan, 680-050, Republic of Korea. rock@korea.kr.
Naohisa KandaThe Institute of Cetacean Research, Toyomi 4-5, Chuo-ku, Tokyo, 104-0055, Japan. kanda@cetacean.jp.
Chul-Min AnBiotechnology Research Division, National Fisheries Research & Development Institute, Gijang gun, Busan, 619-705, Republic of Korea. ancm@korea.kr.
Hye Suck AnBiotechnology Research Division, National Fisheries Research & Development Institute, Gijang gun, Busan, 619-705, Republic of Korea. hsan97@korea.kr.
Jung-Ha KangBiotechnology Research Division, National Fisheries Research & Development Institute, Gijang gun, Busan, 619-705, Republic of Korea. genetics@korea.kr.
Eun Mi KimBiotechnology Research Division, National Fisheries Research & Development Institute, Gijang gun, Busan, 619-705, Republic of Korea. ocean0629@nfrdi.re.kr.
Du-Hae AnCetacean Research Institute, National Fisheries Research & Development Institute, Nam-gu, Ulsan, 680-050, Republic of Korea. dhan119@korea.kr.
Hojin JungCodes division, Insilicogen,Inc., Suwon, Gyeonggi-do, 441-813, Republic of Korea. hjjung@insilicogen.com.
Myunghee JoungCodes division, Insilicogen,Inc., Suwon, Gyeonggi-do, 441-813, Republic of Korea. mhjung@insilicogen.com.
Myung Hum ParkTNT Research, #924 Doosan Venture Digm, Anyang, Gyeonggi-do, 431-755, Republic of Korea. pmh@tntresearch.co.kr.
Sook Hee YoonDepartment of Agricultural Biotechnology, Seoul National University, Seoul, 151-921, Republic of Korea. yoonsh312@snu.ac.kr.
Bo-Young LeeDepartment of Agricultural Biotechnology, Seoul National University, Seoul, 151-921, Republic of Korea. bylee613@snu.ac.kr.
Taeheon LeeDepartment of Agricultural Biotechnology, Seoul National University, Seoul, 151-921, Republic of Korea. taeheon@snu.ac.kr.
Kyu-Won KimInterdisciplinary Program in Bioinformatics, Seoul National University, Seoul, 151-742, Republic of Korea. shkyuwon@gmail.com.
Won Cheoul ParkDepartment of Agricultural Biotechnology, Seoul National University, Seoul, 151-921, Republic of Korea. bbadack@snu.ac.kr.
Dong Hyun ShinDepartment of Agricultural Biotechnology, Seoul National University, Seoul, 151-921, Republic of Korea. sdh1214@snu.ac.kr.
Young Sub LeeInterdisciplinary Program in Bioinformatics, Seoul National University, Seoul, 151-742, Republic of Korea. lcslys2@snu.ac.kr.
Jaemin KimInterdisciplinary Program in Bioinformatics, Seoul National University, Seoul, 151-742, Republic of Korea. jmkim85@snu.ac.kr.
Woori KwakInterdisciplinary Program in Bioinformatics, Seoul National University, Seoul, 151-742, Republic of Korea. asleo02@snu.ac.kr.
Hyeon Jeong KimC&K Genomics, Seoul National University Research Park, Seoul, 151-919, Republic of Korea. kimhj@cnkgenomics.com.
Young-Jun KwonInterdisciplinary Program in Bioinformatics, Seoul National University, Seoul, 151-742, Republic of Korea. youngjun0827@snu.ac.kr.
Sunjin MoonDepartment of Genome Sciences, University of Washington, Seattle, WA, 98195-5065, USA. sunjin@uw.edu.
Yuseob KimDepartment of Life Science, Ewha Womans University, Seoul, Korea. yuseob@ewha.ac.kr.
David W BurtThe Roslin Institute, University of Edinburgh, Midlothian, EH25 9GR, UK. dave.burt@roslin.ed.ac.uk.
Seoae ChoC&K Genomics, Seoul National University Research Park, Seoul, 151-919, Republic of Korea. seoae@cnkgenomics.com.
Heebal KimDepartment of Agricultural Biotechnology, Seoul National University, Seoul, 151-921, Republic of Korea. heebal@snu.ac.kr.
Seoul National University · KRNational Fisheries Research and Development Institute · KRInsilicogen (South Korea) · KRDoosan (South Korea) · KREwha Womans University · KRRoslin Institute · GBUniversity of Washington · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundWhales have captivated the human imagination for millennia. These incredible cetaceans are the only mammals that have adapted to life in the open oceans and have been a source of human food, fuel and tools around the globe. The transition from land to water has led to various aquatic specializations related to hairless skin and ability to regulate their body temperature in cold water.

resultsWe present four common minke whale (Balaenoptera acutorostrata) genomes with depth of ×13 ~ ×17 coverage and perform resequencing technology without a reference sequence. Our results indicated the time to the most recent common ancestors of common minke whales to be about 2.3574 (95% HPD, 1.1521 - 3.9212) million years ago. Further, we found that genes associated with epilation and tooth-development showed signatures of positive selection, supporting the morphological uniqueness of whales.

conclusionsThis whole-genome sequencing offers a chance to better understand the evolutionary journey of one of the largest mammals on earth.

Indexed as

Biological EvolutionGenomeAnimalsBayes TheoremDolphinsHigh-Throughput Nucleotide SequencingMinke WhalePhylogenySequence Analysis, DNA

Identifiers

PMID25609461
PMCPMC4311506
OpenAlexW2107024928

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.