Evidence map›Paper›PMID 25720531›Full record

ArticleMechanisms of development2015

AUF-1 and YB-1 independently regulate β-globin mRNA in developing erythroid cells through interactions with poly(A)-binding protein.

Sebastiaan van Zalen, Alyssa A Lombardi, Grace R Jeschke, Elizabeth O Hexner, J Eric Russell

Abstract read
In one paragraph

Article in Mechanisms of development, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.3field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Post-transcriptional regulation of erythropoiesis.Blood science (Baltimore, Md.) · 2023
    Review
  3. Article
  4. NNature communications · 2019
    Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Sebastiaan van ZalenDepartment of Medicine (Hematology-Oncology), Perelman School of Medicine, University of Pennsylvania, 3400 Spruce Street, Philadelphia, PA 19104, USA.
Alyssa A LombardiDepartment of Medicine (Hematology-Oncology), Perelman School of Medicine, University of Pennsylvania, 3400 Spruce Street, Philadelphia, PA 19104, USA.
Grace R JeschkeDepartment of Medicine (Hematology-Oncology), Perelman School of Medicine, University of Pennsylvania, 3400 Spruce Street, Philadelphia, PA 19104, USA.
Elizabeth O HexnerDepartment of Medicine (Hematology-Oncology), Perelman School of Medicine, University of Pennsylvania, 3400 Spruce Street, Philadelphia, PA 19104, USA.
J Eric RussellDepartment of Medicine (Hematology-Oncology), Perelman School of Medicine, University of Pennsylvania, 3400 Spruce Street, Philadelphia, PA 19104, USA. Electronic address: jeruss@mail.med.upenn.edu.
University of Pennsylvania · US

Funding

REGULATION AND FUNCTION OF A HUMAN EMBRYONIC GLOBINR01HL061399 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI RUSSELL, J ERIC · 1999 to 2012
$3.9M
Nucleolin-mediated stabilization of human B-globin mRNAR01HL082754 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI RUSSELL, J ERIC · 2007 to 2011
$2.0M
NHLBI NIH HHS HL082754NHLBI NIH HHS HL61399NHLBI NIH HHS R01 HL061399NHLBI NIH HHS R01 HL082754
6 · The paper itself

Abstract

The normal expression of β-globin protein in mature erythrocytes is critically dependent on post-transcriptional events in erythroid progenitors that ensure the high stability of β-globin mRNA. Previous work has revealed that these regulatory processes require AUF-1 and YB-1, two RNA-binding proteins that assemble an mRNP β-complex on the β-globin 3'UTR. Here, we demonstrate that the β-complex organizes during the erythropoietic interval when both β-globin mRNA and protein accumulate rapidly, implicating the importance of this regulatory mRNP to normal erythroid differentiation. Subsequent functional analyses link β-complex assembly to the half-life of β-globin mRNA in vivo, providing a mechanistic basis for this regulatory activity. AUF-1 and YB-1 appear to serve a redundant post-transcriptional function, as both β-complex assembly and β-globin mRNA levels are reduced by coordinate depletion of the two factors, and can be restored by independent rescue with either factor alone. Additional studies demonstrate that the β-complex assembles more efficiently on polyadenylated transcripts, implicating a model in which the β-complex enhances the binding of PABPC1 to the poly(A) tail, inhibiting mRNA deadenylation and consequently effecting the high half-life of β-globin transcripts in erythroid progenitors. These data specify a post-transcriptional mechanism through which AUF1 and YB1 contribute to the normal development of erythropoietic cells, as well as to non-hematopoietic tissues in which AUF1- and YB1-based regulatory mRNPs have been observed to assemble on heterologous mRNAs.

Indexed as

3' Untranslated Regionsbeta-GlobinsCell DifferentiationCell LineErythroid CellsHeterogeneous-Nuclear Ribonucleoprotein DHeterogeneous Nuclear Ribonucleoprotein D0HumansPoly(A)-Binding Protein IIRNA, MessengerRNA Processing, Post-TranscriptionalY-Box-Binding Protein 13' Untranslated Regionsbeta-GlobinsHeterogeneous-Nuclear Ribonucleoprotein DHeterogeneous Nuclear Ribonucleoprotein D0HNRNPD protein, humanPoly(A)-Binding Protein IIRNA, MessengerY-Box-Binding Protein 1YBX1 protein, humanErythroid developmentmRNA stabilityβ globin

Identifiers

PMID25720531
PMCPMC4390516
OpenAlexW1969354326

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.