Evidence map›Paper›PMID 25728669›Full record

ArticleCell2015

Tuning cytokine receptor signaling by re-orienting dimer geometry with surrogate ligands.

Ignacio Moraga, Gerlinde Wernig, Stephan Wilmes, Vitalina Gryshkova, Christian P Richter, Wan-Jen Hong, Rahul Sinha, Feng Guo, Hyna Fabionar, Tom S Wehrman and 9 more

Open access · bronzeAbstract read
In one paragraph

Article in Cell, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 107 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
107citing papers in PubMed, 1 pooled it
7.9field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

107 citing papers in PubMed, 1 synthesis or guideline pooled it, 169 citations in OpenAlex.

  1. JAK inhibitors and COVID-19.Journal for immunotherapy of cancer · 2022
    Pooled it
  2. Article
  3. Article
  4. Review
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Tuning of G-CSFR signaling by de novo-designed agonists.Molecular therapy : the journal of the American Society of Gene Therapy · 2025
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. The JAK-STAT pathway: from structural biology to cytokine engineering.Signal transduction and targeted therapy · 2024
    Review
  17. Article
  18. Article
  19. Review
  20. Article

47 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 8 institutions in 5 countries.

Ignacio MoragaHoward Hughes Medical Institute, Stanford University School of Medicine, Stanford, CA 94305-5345, USA; Department of Molecular and Cellular Physiology, Stanford University School of Medicine, Stanford, CA 94305-5345, USA.
Gerlinde WernigInstitute for Stem Cell Biology and Regenerative Medicine, Stanford University School of Medicine, Stanford, CA 94305-5345, USA; Department of Pathology, Division of Hematopathology, Stanford University School of Medicine, Stanford, CA 94305-5345, USA.
Stephan WilmesDivision of Biophysics, Department of Biology, University of Osnabrück, 49076 Osnabrück, Germany.
Vitalina GryshkovaLudwig Institute for Cancer Research and de Duve Institute, Université catholique de Louvain, 1200 Brussels, Belgium.
Christian P RichterDivision of Biophysics, Department of Biology, University of Osnabrück, 49076 Osnabrück, Germany.
Wan-Jen HongInstitute for Stem Cell Biology and Regenerative Medicine, Stanford University School of Medicine, Stanford, CA 94305-5345, USA; Department of Internal Medicine, Division of Hematology, Stanford University School of Medicine, Stanford, CA 94305-5345, USA.
Rahul SinhaInstitute for Stem Cell Biology and Regenerative Medicine, Stanford University School of Medicine, Stanford, CA 94305-5345, USA.
Feng GuoHoward Hughes Medical Institute, Stanford University School of Medicine, Stanford, CA 94305-5345, USA; Department of Molecular and Cellular Physiology, Stanford University School of Medicine, Stanford, CA 94305-5345, USA.
Hyna FabionarDiscoveRx, 42501 Albrae Street, Fremont, CA 94538, USA.
Tom S WehrmanPrimity Bio, 3350 Scott Boulevard, Suite 6101, Santa Clara, CA 95054, USA.
Peter KrutzikPrimity Bio, 3350 Scott Boulevard, Suite 6101, Santa Clara, CA 95054, USA.
Samuel DemharterDepartment of Computational Biology, Department of Computer Science, University of Oxford, Oxford OX1 3QD, UK.
Isabelle PloInstitut Gustave Roussy, INSERM U1009, 94805 Villejuif, France.
Irving L WeissmanInstitute for Stem Cell Biology and Regenerative Medicine, Stanford University School of Medicine, Stanford, CA 94305-5345, USA.
Peter MinaryDepartment of Computational Biology, Department of Computer Science, University of Oxford, Oxford OX1 3QD, UK.
Ravindra MajetiInstitute for Stem Cell Biology and Regenerative Medicine, Stanford University School of Medicine, Stanford, CA 94305-5345, USA; Department of Internal Medicine, Division of Hematology, Stanford University School of Medicine, Stanford, CA 94305-5345, USA.
Stefan N ConstantinescuLudwig Institute for Cancer Research and de Duve Institute, Université catholique de Louvain, 1200 Brussels, Belgium.
Jacob PiehlerDivision of Biophysics, Department of Biology, University of Osnabrück, 49076 Osnabrück, Germany.
K Christopher GarciaHoward Hughes Medical Institute, Stanford University School of Medicine, Stanford, CA 94305-5345, USA; Department of Molecular and Cellular Physiology, Stanford University School of Medicine, Stanford, CA 94305-5345, USA. Electronic address: kcgarcia@stanford.edu.
Stanford University · USOsnabrück University · DEde Duve Institute · BEPrimity Bio (United States) · USUniversity of Oxford · GBDiscoveRx (United States) · USHoward Hughes Medical Institute · USInserm · FR

Funding

Interrogation of individual cells to identify progenitors and their nichesU01HL099999 · NHLBI · STANFORD UNIVERSITY · PI WEISSMAN, IRVING L. · 2009 to 2015
$7.8M
HSC Diversity: Regulation by Clonal Selection vs Epigenetic InductionR01CA086065 · NCI · STANFORD UNIVERSITY · PI WEISSMAN, IRVING L. · 2000 to 2017
$6.9M
Structure-based engineering of immune cytokine signalingR01AI051321 · NIAID · STANFORD UNIVERSITY · PI Kenan Christopher GARCIA · 2002 to 2026
$5.6M
TRAINING PROGRAM IN INVESTIGATIVE ONCOLOGYT32CA009287 · NCI · STANFORD UNIVERSITY · PI FORD, JAMES M. · 1985 to 2012
$4.6M
Structure, function and engineering of immune cytokine receptor signalingR37AI051321 · NIAID · STANFORD UNIVERSITY · PI GARCIA, KENAN CHRISTOPHER · 2013 to 2022
$4.2M
Howard Hughes Medical InstituteNCI NIH HHS R01 CA086065NCI NIH HHS T32 CA009287NCI NIH HHS T32CA009287-35NHLBI NIH HHS U01 HL099999NHLBI NIH HHS U01HL099999NIAID NIH HHS R01 AI051321NIAID NIH HHS R01-AI51321NIAID NIH HHS R37 AI051321
6 · The paper itself

Abstract

Most cell-surface receptors for cytokines and growth factors signal as dimers, but it is unclear whether remodeling receptor dimer topology is a viable strategy to "tune" signaling output. We utilized diabodies (DA) as surrogate ligands in a prototypical dimeric receptor-ligand system, the cytokine Erythropoietin (EPO) and its receptor (EpoR), to dimerize EpoR ectodomains in non-native architectures. Diabody-induced signaling amplitudes varied from full to minimal agonism, and structures of these DA/EpoR complexes differed in EpoR dimer orientation and proximity. Diabodies also elicited biased or differential activation of signaling pathways and gene expression profiles compared to EPO. Non-signaling diabodies inhibited proliferation of erythroid precursors from patients with a myeloproliferative neoplasm due to a constitutively active JAK2V617F mutation. Thus, intracellular oncogenic mutations causing ligand-independent receptor activation can be counteracted by extracellular ligands that re-orient receptors into inactive dimer topologies. This approach has broad applications for tuning signaling output for many dimeric receptor systems.

Indexed as

Signal TransductionAmino Acid SequenceAnimalsAntibodies, MonoclonalCell LineCrystallography, X-RayDimerizationErythropoietinHumansJanus Kinase 2MiceModels, MolecularMolecular Dynamics SimulationMolecular Sequence DataPoint MutationProtein EngineeringAntibodies, MonoclonalErythropoietinJAK2 protein, humanJanus Kinase 2Receptors, Erythropoietin

Identifiers

PMID25728669
PMCPMC4766813
OpenAlexW2171835285

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.