Evidence map›Paper›PMID 25758998›Full record

ArticleEuropean journal of human genetics : EJHG2015

Genome-wide genetic investigation of serological measures of common infections.

Rohina Rubicz, Robert Yolken, Eugene Drigalenko, Melanie A Carless, Thomas D Dyer, Jack Kent, Joanne E Curran, Matthew P Johnson, Shelley A Cole, Sharon P Fowler and 9 more

Abstract read
In one paragraph

Article in European journal of human genetics : EJHG, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed, 3 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 3 syntheses or guidelines pooled it.

  1. Pooled it
  2. Pooled it
  3. Pooled it
  4. Trial
  5. Immunoglobulin allotypes andJournal of Alzheimer's disease : JAD · 2026
    Article
  6. Article
  7. Review
  8. Article
  9. Forward Genetics in Apicomplexa Biology: The Host Side of the Story.Frontiers in cellular and infection microbiology · 2022
    Review
  10. Co-Occurrence of Hepatitis A Infection and Chronic Liver Disease.International journal of molecular sciences · 2020
    Review
  11. Article
  12. Review
  13. Review
  14. Review
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors.

Rohina RubiczDivision of Public Health Sciences, Fred Hutchinson Cancer Research Center, Seattle, WA, USA.
Robert YolkenStanley Division of Developmental Neurovirology, Johns Hopkins University School of Medicine, Baltimore, MD, USA.
Eugene DrigalenkoDepartment of Genetics, Texas Biomedical Research Institute, San Antonio, TX, USA.
Melanie A CarlessDepartment of Genetics, Texas Biomedical Research Institute, San Antonio, TX, USA.
Thomas D DyerDepartment of Genetics, Texas Biomedical Research Institute, San Antonio, TX, USA.
Jack KentDepartment of Genetics, Texas Biomedical Research Institute, San Antonio, TX, USA.
Joanne E CurranDepartment of Genetics, Texas Biomedical Research Institute, San Antonio, TX, USA.
Matthew P JohnsonDepartment of Genetics, Texas Biomedical Research Institute, San Antonio, TX, USA.
Shelley A ColeDepartment of Genetics, Texas Biomedical Research Institute, San Antonio, TX, USA.
Sharon P FowlerDivision of Clinical Epidemiology, Department of Medicine, University of Texas Health Science Center at San Antonio, San Antonio, TX, USA.
Rector AryaDivision of Endocrinology and Diabetes, Department of Pediatrics, University of Texas Health Science Center at San Antonio, San Antonio, TX, USA.
Sobha PuppalaDepartment of Genetics, Texas Biomedical Research Institute, San Antonio, TX, USA.
Laura AlmasyDepartment of Genetics, Texas Biomedical Research Institute, San Antonio, TX, USA.
Eric K MosesCenter for Genetic Epidemiology and Biostatistics, The University of Western Australia, Perth, WA, Australia.
Ellen KraigDepartment of Cellular and Structural Biology, University of Texas Health Science Center at San Antonio, San Antonio, TX, USA.
Ravindranath DuggiralaDepartment of Genetics, Texas Biomedical Research Institute, San Antonio, TX, USA.
John BlangeroDepartment of Genetics, Texas Biomedical Research Institute, San Antonio, TX, USA.
Charles T LeachDepartment of Pediatrics, Section of Infectious Diseases, Baylor College of Medicine/Children's Hospital of San Antonio, San Antonio, TX, USA.
Harald H H GöringDepartment of Genetics, Texas Biomedical Research Institute, San Antonio, TX, USA.

Funding

PEDIGREE ANALYSIS OF LIPOPROTEIN PHENOTYPESP01HL045522 · NHLBI · TEXAS BIOMEDICAL RESEARCH INSTITUTE · PI MAHANEY, MICHAEL CHARLES · 1991 to 2012
$27.6M
Institute for Integration of Medicine & Science: A Partnership to Improve HealthUL1TR001120 · NCATS · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI CLARK, ROBERT A, HARGREAVES, KENNETH M · 2013 to 2017
$16.5M
Quantitative Trait Locus Mapping in Human PedigreesR37MH059490 · NIMH · TEXAS BIOMEDICAL RESEARCH INSTITUTE · PI BLANGERO, JOHN · 2001 to 2010
$6.8M
Genetics of Brain Structure and FunctionR01MH078111 · NIMH · TEXAS BIOMEDICAL RESEARCH INSTITUTE · PI BLANGERO, JOHN · 2006 to 2014
$4.5M
Genetics of Brain Structure and FunctionR01MH078143 · NIMH · YALE UNIVERSITY · PI GLAHN, DAVID C · 2006 to 2014
$4.3M
Genetics of Brain Structure and Function: Genome-Wide AssociationR01MH083824 · NIMH · YALE UNIVERSITY · PI GLAHN, DAVID C · 2008 to 2013
$3.3M
EXTRAMULAR RESEARCH FACILITIES CONSTRUCTIONC06RR017515 · NCRR · SOUTHWEST FOUNDATION FOR BIOMEDICAL RES · PI SHADE, ROBERT E · 2003 to 2003
$3.1M
High Performance Computing System for Human GenomicsS10RR029392 · NCRR · TEXAS BIOMEDICAL RESEARCH INSTITUTE · PI BLANGERO, JOHN · 2010 to 2010
$2.1M
Genetics of Infection and its Relationship with CVD RiskR01HL080149 · NHLBI · TEXAS BIOMEDICAL RESEARCH INSTITUTE · PI GORING, HARALD HEINZ HERBERT · 2006 to 2009
$1.9M
QUANTITATIVE TRAIT LOCUS MAPPING IN HUMAN PEDIGREESR01MH059490 · NIMH · SOUTHWEST FOUNDATION FOR BIOMEDICAL RES · PI BLANGERO, JOHN · 1998 to 2000
$426k
NCATS NIH HHS UL1 TR001120NCRR NIH HHS C06 RR017515NCRR NIH HHS RR017515NCRR NIH HHS S10 RR029392NHLBI NIH HHS HL045522NHLBI NIH HHS HL080149NHLBI NIH HHS P01 HL045522NHLBI NIH HHS R01 HL080149NIMHD NIH HHS L60 MD003255NIMH NIH HHS MH059490NIMH NIH HHS MH078111NIMH NIH HHS MH078143NIMH NIH HHS MH083824NIMH NIH HHS R01 MH059490NIMH NIH HHS R01 MH078111NIMH NIH HHS R01 MH078143NIMH NIH HHS R01 MH083824NIMH NIH HHS R37 MH059490
6 · The paper itself

Abstract

Populations and individuals differ in susceptibility to infections because of a number of factors, including host genetic variation. We previously demonstrated that differences in antibody titer, which reflect infection history, are significantly heritable. Here we attempt to identify the genetic factors influencing variation in these serological phenotypes. Blood samples from >1300 Mexican Americans were quantified for IgG antibody level against 12 common infections, selected on the basis of their reported role in cardiovascular disease risk: Chlamydia pneumoniae; Helicobacter pylori; Toxoplasma gondii; cytomegalovirus; herpes simplex I virus; herpes simplex II virus; human herpesvirus 6 (HHV6); human herpesvirus 8 (HHV8); varicella zoster virus; hepatitis A virus (HAV); influenza A virus; and influenza B virus. Pathogen-specific quantitative antibody levels were analyzed, as were three measures of pathogen burden. Genome-wide linkage and joint linkage and association analyses were performed using ~1 million SNPs. Significant linkage (lod scores >3.0) was obtained for HHV6 (on chromosome 7), HHV8 (on chromosome 6), and HAV (on chromosome 13). SNP rs4812712 on chromosome 20 was significantly associated with C. pneumoniae (P=5.3 × 10(-8)). However, no genome-wide significant loci were obtained for the other investigated antibodies. We conclude that it is possible to localize host genetic factors influencing some of these antibody traits, but that further larger-scale investigations will be required to elucidate the genetic mechanisms contributing to variation in antibody levels.

Indexed as

Antibodies, BacterialAntibodies, ViralBacteriaGenetic LinkageGenome-Wide Association StudyHumansImmunoglobulin GInfectionsLod ScorePolymorphism, Single NucleotideRisk FactorsVirusesAntibodies, BacterialAntibodies, ViralImmunoglobulin G

Identifiers

PMID25758998
PMCPMC4613484

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.