Evidence map›Paper›PMID 25849395›Full record

ArticleActa crystallographica. Section D, Biological crystallography2015

Structure of the N-terminal domain of the protein Expansion: an 'Expansion' to the Smad MH2 fold.

Mads Beich-Frandsen, Eric Aragón, Marta Llimargas, Jordi Benach, Antoni Riera, Joan Pous, Maria J Macias

Abstract read
In one paragraph

Article in Acta crystallographica. Section D, Biological crystallography, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
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  5. Biology open · 2018
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Mads Beich-FrandsenInstitute for Research in Biomedicine (IRB Barcelona), Baldiri Reixac 10, 08028 Barcelona, Spain.
Eric AragónInstitute for Research in Biomedicine (IRB Barcelona), Baldiri Reixac 10, 08028 Barcelona, Spain.
Marta LlimargasInstitut de Biologia Molecular de Barcelona, IBMB-CSIC, Baldiri Reixac 10, 08028 Barcelona, Spain.
Jordi BenachALBA Synchrotron, BP 1413, km 3.3, Cerdanyola del Vallès, Spain.
Antoni RieraInstitute for Research in Biomedicine (IRB Barcelona), Baldiri Reixac 10, 08028 Barcelona, Spain.
Joan PousInstitute for Research in Biomedicine (IRB Barcelona), Baldiri Reixac 10, 08028 Barcelona, Spain.
Maria J MaciasInstitute for Research in Biomedicine (IRB Barcelona), Baldiri Reixac 10, 08028 Barcelona, Spain.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Gene-expression changes observed in Drosophila embryos after inducing the transcription factor Tramtrack led to the identification of the protein Expansion. Expansion contains an N-terminal domain similar in sequence to the MH2 domain characteristic of Smad proteins, which are the central mediators of the effects of the TGF-β signalling pathway. Apart from Smads and Expansion, no other type of protein belonging to the known kingdoms of life contains MH2 domains. To compare the Expansion and Smad MH2 domains, the crystal structure of the Expansion domain was determined at 1.6 Å resolution, the first structure of a non-Smad MH2 domain to be characterized to date. The structure displays the main features of the canonical MH2 fold with two main differences: the addition of an α-helical region and the remodelling of a protein-interaction site that is conserved in the MH2 domain of Smads. Owing to these differences, to the new domain was referred to as Nα-MH2. Despite the presence of the Nα-MH2 domain, Expansion does not participate in TGF-β signalling; instead, it is required for other activities specific to the protostome phyla. Based on the structural similarities to the MH2 fold, it is proposed that the Nα-MH2 domain should be classified as a new member of the Smad/FHA superfamily.

Indexed as

Amino Acid SequenceAnimalsCrystallography, X-RayDrosophilaDrosophila ProteinsHumansModels, MolecularMolecular Sequence DataProtein Interaction MapsProtein Structure, TertiarySequence AlignmentSignal TransductionSmad2 ProteinSmad ProteinsTransforming Growth Factor betaDrosophila Proteinsexp protein, DrosophilaSmad2 ProteinSmad ProteinsTransforming Growth Factor betaExpansion proteinMH2 domainphenix.mr_rosettaprotein–protein interactionSmad/FHA protein superfamilySmad homology domain 2

Identifiers

PMID25849395
PMCPMC4388265

What Socratic holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.