Evidence map›Paper›PMID 25905630›Full record

ArticlePloS one2015

ZNF804A Transcriptional Networks in Differentiating Neurons Derived from Induced Pluripotent Stem Cells of Human Origin.

Jian Chen, Mingyan Lin, Anastasia Hrabovsky, Erika Pedrosa, Jason Dean, Swati Jain, Deyou Zheng, Herbert M Lachman

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed, 1 pooled it
5.2field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 1 synthesis or guideline pooled it, 50 citations in OpenAlex.

  1. Pooled it
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  3. Review
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  8. Article
  9. Article
  10. Protein Translation and Psychiatric Disorders.The Neuroscientist : a review journal bringing neurobiology, neurology and psychiatry · 2020
    Review
  11. Article
  12. Review
  13. Article
  14. Article
  15. Convergent analysis of genome-wide genotyping and transcriptomic data suggests association of zinc finger genes with lithium response in bipolar disorder.American journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics · 2018
    Article
  16. Recent Advances in the Genetics of Schizophrenia.Molecular neuropsychiatry · 2018
    Review
  17. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Jian ChenDepartment of Psychiatry and Behavioral Sciences, Albert Einstein College of Medicine, Bronx, New York, United States of America.
Mingyan LinDepartment of Genetics, Albert Einstein College of Medicine, Bronx, New York, United States of America.
Anastasia HrabovskyDepartment of Psychiatry and Behavioral Sciences, Albert Einstein College of Medicine, Bronx, New York, United States of America.
Erika PedrosaDepartment of Psychiatry and Behavioral Sciences, Albert Einstein College of Medicine, Bronx, New York, United States of America.
Jason DeanDepartment of Psychiatry and Behavioral Sciences, Albert Einstein College of Medicine, Bronx, New York, United States of America.
Swati JainDepartment of Psychiatry and Behavioral Sciences, Albert Einstein College of Medicine, Bronx, New York, United States of America.
Deyou ZhengDepartment of Genetics, Albert Einstein College of Medicine, Bronx, New York, United States of America; Dominick Purpura Department of Neuroscience, Albert Einstein College of Medicine, Bronx, New York, United States of America; Department of Neurology, Albert Einstein College of Medicine, Bronx, New York, United States of America.
Herbert M LachmanDepartment of Psychiatry and Behavioral Sciences, Albert Einstein College of Medicine, Bronx, New York, United States of America; Department of Genetics, Albert Einstein College of Medicine, Bronx, New York, United States of America; Dominick Purpura Department of Neuroscience, Albert Einstein College of Medicine, Bronx, New York, United States of America; Department of Medicine, Albert Einstein College of Medicine, Bronx, New York, United States of America.
Albert Einstein College of Medicine · US

Funding

Monoallelic expression in neurons derived from induced pluripotent stem cellsR01MH099427 · NIMH · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI LACHMAN, HERBERT M · 2013 to 2017
$2.1M
Molecular analysis of bipolar and schizophrenia candidate genesR01MH073164 · NIMH · ALBERT EINSTEIN COLLEGE OF MEDICINE · PI LACHMAN, HERBERT M · 2006 to 2012
$1.6M
Analysis of Glutamatergic Neurons Derived from Patient-Specific iPS CellsR33MH087840 · NIMH · ALBERT EINSTEIN COLLEGE OF MEDICINE · PI LACHMAN, HERBERT M · 2010 to 2011
$814k
Schizophrenia-associated long non-coding RNAs in neurons derived from iPS cellsR21MH097893 · NIMH · ALBERT EINSTEIN COLLEGE OF MEDICINE · PI LACHMAN, HERBERT M · 2013 to 2014
$459k
Analysis of Glutamatergic Neurons Derived from Patient-Specific iPS CellsR21MH087840 · NIMH · ALBERT EINSTEIN COLLEGE OF MEDICINE · PI LACHMAN, HERBERT M · 2009 to 2009
$332k
NIMH NIH HHS MH073164NIMH NIH HHS MH087840NIMH NIH HHS MH097893NIMH NIH HHS MH099427NIMH NIH HHS R01 MH073164NIMH NIH HHS R01 MH099427NIMH NIH HHS R21 MH087840NIMH NIH HHS R21 MH097893NIMH NIH HHS R33 MH087840
6 · The paper itself

Abstract

ZNF804A (Zinc Finger Protein 804A) has been identified as a candidate gene for schizophrenia (SZ), autism spectrum disorders (ASD), and bipolar disorder (BD) in replicated genome wide association studies (GWAS) and by copy number variation (CNV) analysis. Although its function has not been well-characterized, ZNF804A contains a C2H2-type zinc-finger domain, suggesting that it has DNA binding properties, and consequently, a role in regulating gene expression. To further explore the role of ZNF804A on gene expression and its downstream targets, we used a gene knockdown (KD) approach to reduce its expression in neural progenitor cells (NPCs) derived from induced pluripotent stem cells (iPSCs). KD was accomplished by RNA interference (RNAi) using lentiviral particles containing shRNAs that target ZNF804A mRNA. Stable transduced NPC lines were generated after puromycin selection. A control cell line expressing a random (scrambled) shRNA was also generated. Neuronal differentiation was induced, RNA was harvested after 14 days and transcriptome analysis was carried out using RNA-seq. 1815 genes were found to be differentially expressed at a nominally significant level (p<0.05); 809 decreased in expression in the KD samples, while 1106 increased. Of these, 370 achieved genome wide significance (FDR<0.05); 125 were lower in the KD samples, 245 were higher. Pathway analysis showed that genes involved in interferon-signaling were enriched among those that were down-regulated in the KD samples. Correspondingly, ZNF804A KD was found to affect interferon-alpha 2 (IFNA2)-mediated gene expression. The findings suggest that ZNF804A may affect a differentiating neuron's response to inflammatory cytokines, which is consistent with models of SZ and ASD that support a role for infectious disease, and/or autoimmunity in a subgroup of patients.

Indexed as

Cell DifferentiationGene Regulatory NetworksTranscription, GeneticCell LineGene Knockdown TechniquesHumansInduced Pluripotent Stem CellsKruppel-Like Transcription FactorsNeuronsRNA InterferenceKruppel-Like Transcription FactorsZNF804A protein, human

Identifiers

PMID25905630
PMCPMC4408091
OpenAlexW2011782794

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.