ArticlePloS one2015
Unmasking Novel Loci for Internal Phosphorus Utilization Efficiency in Rice Germplasm through Genome-Wide Association Analysis.
Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
35 citing papers in PubMed, 97 citations in OpenAlex.
- Phenotypic, Physiological, and Gene Expression Analysis for Nitrogen and Phosphorus Use Efficienies in Three Popular Genotypes of Rice (Plants (Basel, Switzerland) · 2024Article
- Characterization of quantitative trait loci from DJ123 (Molecular breeding : new strategies in plant improvement · 2024Article
- Rice breeding for low input agriculture.Frontiers in plant science · 2024Review
- Novel QTL for Lateral Root Density and Length Improve Phosphorus Uptake in Rice (Oryza sativa L.).Rice (New York, N.Y.) · 2023Article
- A meta-QTL analysis highlights genomic hotspots associated with phosphorus use efficiency in rice (Frontiers in plant science · 2023Article
- Genome-wide association study identifies a gene conferring high physiological phosphorus use efficiency in rice.Frontiers in plant science · 2023Article
- Adaptive strategies of plants to conserve internal phosphorus under P deficient condition to improve P utilization efficiency.Physiology and molecular biology of plants : an international journal of functional plant biology · 2022Review
- Identifying genes associated with abiotic stress tolerance suitable for CRISPR/Cas9 editing in upland rice cultivars adapted to acid soils.Plant direct · 2022Article
- Mechanisms for improving phosphorus utilization efficiency in plants.Annals of botany · 2022Review
- Leaf phosphorus fractionation in rice to understand internal phosphorus-use efficiency.Annals of botany · 2022Article
- Identification of Phosphorus Stress Related Proteins in the Seedlings of Dongxiang Wild Rice (Genes · 2022Article
- Article
- Haplotype breeding for unlocking and utilizing plant genomics data.Frontiers in genetics · 2022Article
- Article
- Genetic Variation for Traits Related to Phosphorus Use Efficiency inPlants (Basel, Switzerland) · 2021Article
- Genome-wide association study dissects the genetic control of plant height and branch number in response to low-phosphorus stress in Brassica napus.Annals of botany · 2021Article
- From gene banks to farmer's fields: using genomic selection to identify donors for a breeding program in rice to close the yield gap on smallholder farms.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2021Article
- Potential of rice landraces with strong culms as genetic resources for improving lodging resistance against super typhoons.Scientific reports · 2021Article
- Population structure and genome-wide association studies in bread wheat for phosphorus efficiency traits using 35 K Wheat Breeder's Affymetrix array.Scientific reports · 2021Article
- Novel Genes and Genetic Loci Associated With Root Morphological Traits, Phosphorus-Acquisition Efficiency and Phosphorus-Use Efficiency in Chickpea.Frontiers in plant science · 2021Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
9 authors at 4 institutions in 3 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Depletion of non-renewable rock phosphate reserves and phosphorus (P) fertilizer price increases has renewed interest in breeding P-efficient varieties. Internal P utilization efficiency (PUE) is of prime interest because there has been no progress to date in breeding for high PUE. We characterized the genotypic variation for PUE present within the rice gene pool by using a hydroponic system that assured equal plant P uptake, followed by mapping of loci controlling PUE via Genome-Wide Association Studies (GWAS). Loci associated with PUE were mapped on chromosomes 1, 4, 11 and 12. The highest PUE was associated with a minor indica-specific haplotype on chromosome 1 and a rare aus-specific haplotype on chromosome 11. Comparative variant and expression analysis for genes contained within the chromosome 1 haplotype identified high priority candidate genes. Differences in coding regions and expression patterns between genotypes of contrasting haplotypes, suggested functional alterations for two predicted nucleic acid-interacting proteins that are likely causative for the observed differences in PUE. The loci reported here are the first identified for PUE in any crop that is not confounded by differential P uptake among genotypes. Importantly, modern rice varieties lacked haplotypes associated with superior PUE, and would thus benefit from targeted introgressions of these loci from traditional donors to improve plant growth in phosphorus-limited cropping systems.
Indexed as
Identifiers
What Socratic holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.