Evidence map›Paper›PMID 25940618›Full record

ArticleNucleic acids research2015

Arginine methylation of DRBD18 differentially impacts its opposing effects on the trypanosome transcriptome.

Kaylen Lott, Shreya Mukhopadhyay, Jun Li, Jie Wang, Jin Yao, Yijun Sun, Jun Qu, Laurie K Read

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 37 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Kaylen LottDepartment of Microbiology and Immunology, School of Medicine and Biomedical Sciences, University at Buffalo, Buffalo, NY, USA.
Shreya MukhopadhyayDepartment of Microbiology and Immunology, School of Medicine and Biomedical Sciences, University at Buffalo, Buffalo, NY, USA.
Jun LiDepartment of Pharmaceutical Sciences, University at Buffalo, Buffalo, NY, USA.
Jie WangDepartment of Biochemistry, School of Medicine and Biomedical Sciences, University at Buffalo, Buffalo, NY, USA.
Jin YaoDepartment of Microbiology and Immunology, School of Medicine and Biomedical Sciences, University at Buffalo, Buffalo, NY, USA.
Yijun SunDepartment of Microbiology and Immunology, School of Medicine and Biomedical Sciences, University at Buffalo, Buffalo, NY, USA.
Jun QuDepartment of Pharmaceutical Sciences, University at Buffalo, Buffalo, NY, USA.
Laurie K ReadDepartment of Microbiology and Immunology, School of Medicine and Biomedical Sciences, University at Buffalo, Buffalo, NY, USA lread@buffalo.edu.
University at Buffalo, State University of New York · US

Funding

Systems Biology of GlycosylationR01HL103411 · NHLBI · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI NEELAMEGHAM, SRIRAM · 2011 to 2025
$7.1M
Oral Microbiome and Periodontitis: A Prospective Study in Postmenopausal WomenR01DE024523 · NIDCR · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI WACTAWSKI-WENDE, JEAN · 2014 to 2018
$3.8M
Synergistic Pharmacologicjntervention for Prevention of ROP (SPIPROP STUDY)U54HD071594 · NICHD · SUNY DOWNSTATE MEDICAL CENTER · PI MAGER, DONALD E · 2011 to 2015
$3.6M
Protein Arginine Methylation in TrypanosomesR01AI060260 · NIAID · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI READ, LAURIE K. · 2003 to 2014
$3.3M
Function of Regulator of G protein signaling in aging skeletonR01AG048388 · NIA · UNIVERSITY OF PENNSYLVANIA · PI YANG, SHUYING · 2014 to 2018
$1.7M
Protein Arginine Methylation in TrypanosomesR56AI060260 · NIAID · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI READ, LAURIE K. · 2009 to 2009
$381k
Regulation of a Novel Trypanosome RNA Binding Protein by Arginine MethylationF32AI100350 · NIAID · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI LOTT, KAYLEN · 2013 to 2015
$159k
NHLBI NIH HHS HL103411NIAID NIH HHS AI060260NIAID NIH HHS F32AI100350NIAID NIH HHS R01 AI060260NIA NIH HHS AG048388NICHD NIH HHS U54HD071594NIDCR NIH HHS R01 DE024523
6 · The paper itself

Abstract

Arginine methylation is a posttranslational modification that impacts wide-ranging cellular functions, including transcription, mRNA splicing and translation. RNA binding proteins (RBPs) represent one of the largest classes of arginine methylated proteins in both mammals and the early diverging parasitic protozoan, Trypanosoma brucei. Here, we report the effects of arginine methylation on the functions of the essential and previously uncharacterized T. brucei RBP, DRBD18. RNAseq analysis shows that DRBD18 depletion causes extensive rearrangement of the T. brucei transcriptome, with increases and decreases in hundreds of mRNAs. DRBD18 contains three methylated arginines, and we used complementation of DRBD18 knockdown cells with methylmimic or hypomethylated DRBD18 to assess the functions of these methylmarks. Methylmimic and hypomethylated DRBD18 associate with different ribonucleoprotein complexes. These altered macromolecular interactions translate into differential impacts on the T. brucei transcriptome. Methylmimic DRBD18 preferentially stabilizes target RNAs, while hypomethylated DRBD18 is more efficient at destabilizing RNA. The protein arginine methyltransferase, TbPRMT1, interacts with DRBD18 and knockdown of TbPRMT1 recapitulates the effects of hypomethylated DRBD18 on mRNA levels. Together, these data support a model in which arginine methylation acts as a switch that regulates T. brucei gene expression.

Indexed as

TranscriptomeArginineCytoplasmGene Expression RegulationMethylationProtein-Arginine N-MethyltransferasesProtein Structure, TertiaryProtozoan ProteinsRNARNA-Binding ProteinsRNA StabilityTrypanosoma brucei bruceiArgininePRMT1 protein, Trypanosoma bruceiProtein-Arginine N-MethyltransferasesProtozoan ProteinsRNARNA-Binding Proteins

Identifiers

PMID25940618
PMCPMC4477658
OpenAlexW1629379230

What Socratic holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.