Evidence map›Paper›PMID 26026709›Full record

ReviewBiotechnology advances2015

Cracking the nodule worm code advances knowledge of parasite biology and biotechnology to tackle major diseases of livestock.

Rahul Tyagi, Anja Joachim, Bärbel Ruttkowski, Bruce A Rosa, John C Martin, Kymberlie Hallsworth-Pepin, Xu Zhang, Philip Ozersky, Richard K Wilson, Shoba Ranganathan and 3 more

Open access · greenAbstract readReview
In one paragraph

Review in Biotechnology advances, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
5.5field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Parasitology · 2021
    Article
  5. Article
  6. Article
  7. Article
  8. Metazoan Parasite Vaccines: Present Status and Future Prospects.Frontiers in cellular and infection microbiology · 2018
    Review
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 3 countries.

Rahul TyagiThe Genome Institute, Washington University in St. Louis, MO 63108, USA.
Anja JoachimInstitute of Parasitology, Department of Pathobiology, University of Veterinary Medicine Vienna, Veterinärplatz 1, A-1210 Vienna, Austria.
Bärbel RuttkowskiInstitute of Parasitology, Department of Pathobiology, University of Veterinary Medicine Vienna, Veterinärplatz 1, A-1210 Vienna, Austria.
Bruce A RosaThe Genome Institute, Washington University in St. Louis, MO 63108, USA.
John C MartinThe Genome Institute, Washington University in St. Louis, MO 63108, USA.
Kymberlie Hallsworth-PepinThe Genome Institute, Washington University in St. Louis, MO 63108, USA.
Xu ZhangThe Genome Institute, Washington University in St. Louis, MO 63108, USA.
Philip OzerskyThe Genome Institute, Washington University in St. Louis, MO 63108, USA.
Richard K WilsonThe Genome Institute, Washington University in St. Louis, MO 63108, USA.
Shoba RanganathanDepartment of Chemistry and Biomolecular Sciences, Macquarie University, Sydney, New South Wales, Australia.
Paul W SternbergHHMI, Division of Biology, California Institute of Technology, Pasadena, CA 91125, USA.
Robin B GasserFaculty of Veterinary and Agricultural Sciences, The University of Melbourne, Parkville, Victoria 3010, Australia. Electronic address: robinbg@unimelb.edu.au.
Makedonka MitrevaThe Genome Institute, Washington University in St. Louis, MO 63108, USA; Division of Infectious Diseases, Department of Medicine, Washington University School of Medicine, St. Louis, MO 63110, USA. Electronic address: mmitreva@genome.wustl.edu.
Washington University in St. Louis · USUniversity of Veterinary Medicine Vienna · ATCalifornia Institute of Technology · USMacquarie University · AUUniversity of Melbourne · AU

Funding

Large Scale Genome SequencingU54HG003079 · NHGRI · WASHINGTON UNIVERSITY · PI DUTCHER, SUSAN K · 2004 to 2016
$445.7M
COMPARATIVE GENOMICS OF PARASITIC NEMATODESR01AI081803 · NIAID · WASHINGTON UNIVERSITY · PI MITREVA, MAKEDONKA · 2009 to 2018
$3.1M
EVOLUTION OF THE NEMATODE INTESTINE, A KEY HOST INTERFACER01GM097435 · NIGMS · WASHINGTON UNIVERSITY · PI MITREVA, MAKEDONKA · 2011 to 2019
$2.1M
COMPARATIVE GENOMICS OF PARASITIC NEMATODESR56AI081803 · NIAID · WASHINGTON UNIVERSITY · PI MITREVA, MAKEDONKA · 2019 to 2019
$697k
Howard Hughes Medical InstituteNHGRI NIH HHS U54 HG003079NHGRI NIH HHS U54HG003079NIAID NIH HHS AI081803NIAID NIH HHS R01 AI081803NIAID NIH HHS R56 AI081803NIGMS NIH HHS GM097435NIGMS NIH HHS R01 GM097435
6 · The paper itself

Abstract

Many infectious diseases caused by eukaryotic pathogens have a devastating, long-term impact on animal health and welfare. Hundreds of millions of animals are affected by parasitic nematodes of the order Strongylida. Unlocking the molecular biology of representatives of this order, and understanding nematode-host interactions, drug resistance and disease using advanced technologies could lead to entirely new ways of controlling the diseases that they cause. Oesophagostomum dentatum (nodule worm; superfamily Strongyloidea) is an economically important strongylid nematode parasite of swine worldwide. The present article reports recent advances made in biology and animal biotechnology through the draft genome and developmental transcriptome of O. dentatum, in order to support biological research of this and related parasitic nematodes as well as the search for new and improved interventions. This first genome of any member of the Strongyloidea is 443 Mb in size and predicted to encode 25,291 protein-coding genes. Here, we review the dynamics of transcription throughout the life cycle of O. dentatum, describe double-stranded RNA interference (RNAi) machinery and infer molecules involved in development and reproduction, and in inducing or modulating immune responses or disease. The secretome predicted for O. dentatum is particularly rich in peptidases linked to interactions with host tissues and/or feeding activity, and a diverse array of molecules likely involved in immune responses. This research progress provides an important resource for future comparative genomic and molecular biological investigations as well as for biotechnological research toward new anthelmintics, vaccines and diagnostic tests.

Indexed as

BiotechnologyGenomicsOesophagostomiasisOesophagostomumAnimalsDNA, HelminthSwineSwine DiseasesTranscriptomeDNA, HelminthBioinformaticsBiotechnologyGenomicsLivestockNodule worm diseaseTranscriptomics

Identifiers

PMID26026709
PMCPMC4746232
OpenAlexW1911438911

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.